Suncus etruscus (white-toothed pygmy shrew): 126016347
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Entry
126016347 CDS
T09902
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
126016347 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
setr01009
]
126016347 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
setr04515
]
126016347 (PCDH9)
Protein phosphatases and associated proteins [BR:
setr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
126016347 (PCDH9)
Cell adhesion molecules [BR:
setr04515
]
Cadherins
Protocadherins
126016347 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Big_9
V_ATPase_I
EphA2_TM
MAP17
DUF6249
RCR
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
126016347
NCBI-ProteinID:
XP_049634881
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All DBs
Position
8:complement(83494688..84459770)
Genome browser
AA seq
1237 aa
AA seq
DB search
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDSNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVAE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
NIPVTPQKCPSSAGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SQPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGSYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEESNKNQFNDRKQYGS
NEGHFNNGSHMADIPLANLKSYKQTGGAIESPKEHQL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacctgagggatttttacctgttggctgctctgattgcctgtttaaggctggattct
gcaatagctcaagaacttatttacactattagagaggaattgcctgagaatgtgcccata
ggaaacataccaaaggatctaaacatttctcacatcaatgctgccacagggaccagtgcc
agccttgtctacagactggtttctaaagcgggggatgcccctttggtgaaagtatccagt
agcactggggaaattttcacaacctccaatagaatagacagagaaaaactctgtgctgga
gcctcttacgctgaggagaatgagtgtttctttgaacttgaggtggtgattctccccaat
gactttttcaggctgatcaaaatcaaaataattgtcaaggatagcaatgataatgccccc
atgttcccatcacctgtcatcaatatttccattccagaaaacactttgatcaacagccgc
tttcccatcccatcagcaacagatcctgacacaggcttcaatggtgtacaacattatgaa
ttgttaaatgggcagagtgtttttggactggatattgtggaaactccagagggagagaag
tggccacaattgattgttcagcaaaacttggacagagaacagaaagatacctatgtgatg
aaaatcaaagtagaggatggaggcacgcctcaaaaatccagcacagctatcctgcaggtc
acagtaagtgatgtaaatgacaacaggccagtgttcaaagagggtcaagtggaagtgcat
attccagagaatgcgcctgtaggcacctctgtcattcagctccatgccactgatgcagat
ataggcagtaatgctgaaatccggtacatttttggtgcccaggtcgcccctgcaaccaaa
agactctttgctttaaataatactactggactgattacagttcagaggtccctagaccga
gaggagacagccattcacaaagtgacagtgctggctagtgatggcagctccactcctgct
cgagcaactgttaccatcaatgtcactgatgtaaatgataaccctccaaacatagacctc
aggtacattataagtcccatcaatggcacagtgtatttatctgagaaagatccggtcaat
acgaagattgccctaattacagtttcagataaggacacagatgtgaatggcaaagtgatc
tgtttcattgaacgagaggtcccgtttcatttaaaggcggtgtatgacaaccaatatctg
ttagagacctcctctttgttggactatgagggcaccaaagaattcagctttaaaattgtt
gcctctgattctgggaagcccagtttaaatcagactgccctggtaagggttaagcttgag
gacgaaaatgacaacccaccaattttcagccagcctgtaattgagctgtcagttgcggaa
aacaaccgacgtgggttatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagacattgtttatcagcttggaccgaatgcctccttttttgatctggaccgaaag
acaggagttttgacagcctccagagtctttgacagagaagaacaagagcggttcattttt
acagtaactgccagggacaatgggacccctcccctgcaaagccaagcggcagtgatagtt
actgttctggatgagaatgacaatagccccaagtttacacataatcattttcaatttttt
gtgtctgagaatctgccaaagtatagtactgtgggggtgatcacagtgacagatgcagat
gctggagagaataaagcggtgactctttccattctcaatgacaatgataattttgtcttg
gatccctactctggagtcataaagtcaaatgtctcctttgatagagaacagcagagttcc
tacacttttgatgtcaaagccacggatggaggacagccgcctcgatcctctactgcaaaa
gttactatcaatgtcatggatgtcaatgacaacagtccagttgtcatttccccaccttca
aatacttctttcaagttggtgcccctctcagccattcctggttctgtggttgctgaagtt
tttgcagtggatgtcgacacagggatgaatgctgaactgaagtacactattgtaagtggg
aacaacaaaggtttgtttcgcatcgatcctgtaacaggtaacatcactctggaggagaaa
ccggcacctactgatgtcggtttgcaccgtttggtggtcaacatcagtgatcttgggtac
ccaaagtctttgcacacgcttgtgctggtttttctctacgtgaacgacacagctggaaac
gcctcgtatatctatgacttgatccgcaggactatggagaccccattggacaggaacata
ggggacagcagccaaccctaccaaaatgaggactatctgaccatcatgattgccattgtc
gcaggtgccatggtggtcatagtcgtgatctttgtgactgtccttgtgcgctgtcgccat
gcatccaggttcaaagcagctcagaggagcaagcaaggtgctgaatggatgtccccaaat
caggagaacaaacagaacaagaaaaagaaaaggaagaaaagaaagtctcccaagagttct
cttctgaactttgtgacaattgaagagtccaaaccagatgatgcagttcacgaacctatc
aatgggactatcagcctgccggctgagctggaggagcaaagtataggaagatttgactgg
ggtcccgcacctcccacaaccttcaagcctaacagccctgacctggccaagcactacaaa
tctgcttctccgcagcctgcttttcatcttaaaccagacactcccgtttctgtgaaaaag
catcatgtgattcaggagctccctttggacaacacctttgttgggggttgtgacaccctt
tccaaacgttcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacagtgtaactcacacagcaaaagtgac
aatattcctgtcactcctcagaaatgtcccagctctgcgggtttccacattcaggagaat
gaagaaagccattacgagtcgcagcgccgcgttacattccacctccctgatggctcccag
gaaagctgcagtgacagtggtctaggagaccacgagcctgtggggagtggaaccctgatc
tcacaacctcttcctctggttcagccacaggacgaattctatgaccaggcctctccggac
aagaggactgaagcagacggcaactctgatcccaactctgatgggcctctaggccccaga
ggattagctgaagctacagagatgtgcacacaggagtgcttagttttgggtcattctgat
aattgttggatgcctcctggtttgggttcatatcagcaccctaaatcacctctttcgacc
tttgcaccccagaaagaatgggtcaagaaggacaagcttgtgaatgggcatacacttacc
agagcctggaaagaagagagcaacaagaaccagttcaatgaccgtaagcagtatggctcc
aatgaaggccatttcaacaatggcagccatatggcagacattcctctggcaaacctgaag
tcttacaagcaaacaggaggtgctattgagagccctaaagaacaccaactctaa
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