Suncus etruscus (white-toothed pygmy shrew): 126016581
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Entry
126016581 CDS
T09902
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126016581 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
126016581 (DDX42)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126016581 (DDX42)
Spliceosome [BR:
setr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126016581 (DDX42)
Complex B
126016581 (DDX42)
Complex C
U2 SnRNP specific factors
126016581 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
126016581
NCBI-ProteinID:
XP_049635004
LinkDB
All DBs
Position
1:195016957..195046329
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AA seq
953 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAISAGKKEEPKLPQQSHSAFGAASSASGFGKSAPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKPADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKV
ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNNVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLSNQ
KAGSSAAGASGWTSAGSLNSVPTNSTQQGHNSPDSPVASATKGIPSFGNSGNLSSAPVTY
PSPGAQGINNTVPGTNSREGIGGGNGKRERYTENRGGSRHSHGESGNRHGDSPRHGDGGR
HGDGYRYPESSRHTDGHRHGENRHGGGGGGGSSSSSGGGGGGGGGGGGGGGGRHGESRNA
NDGRNGESRKESCNRESKMDNSKMDKMDSKTDKTADGFAVPEPPKRKKSRWDS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggccctggcactaagaggggatttggctttggaggttttgcc
attagtgctggaaagaaggaggaacccaaacttccacagcagtcccatagtgcctttggg
gcagccagctcagcttctggatttggaaagtcagctccaccacagctcccttctttctac
aaaattggatctaaacgggctaacttcgatgaagaaaatgcgtattttgaagatgaggaa
gaagactctagcaatgttgatttaccttacattcctgctgaaaactcgcctacccgccag
cagtttcattccaagcctgcagattctgacagtgatgatgaccccttggaggcattcatg
gctgaagtggaggatcaagcagctagagatatgaagagacttgaagacaaggacaaggaa
agaaaaaacgtaaagggtattcgagatgacattgaagaagaagatgaccaagaagcttat
tttcggtatatggcagaaaacccaactgctggtgtggttcaagaggaggaggaagataat
ttggaatatgatagtgatggaaatccaattgcaccctccaaaaaaattattgatcctctt
cctcctattgatcattcagagattgactatccaccatttgaaaaaaatttttacaatgag
catgaagagataaccaacctcaccccacagcagctcatagatcttcggcataagctcaac
cttcgggtctctggtgctgcacctcctagaccaggaagtagttttgctcattttgggttt
gatgaacaacttatgcatcagattcggaagtctgaatatacacaacccactccaatacag
tgccagggtgtgcctgtggctttaagtggtagagatatgattggcattgccaaaacaggc
agtggaaaaactgcagcctttatctggcccatgttgattcatataatggaccagaaggaa
ttggaaccaggtgatggaccgattgctgtgattgtatgtcctactagggaactgtgccag
cagatccatgcagaatgtaaacgatttggaaaagcatataatcttcgatcagtggctgtg
tatggaggcgggagcatgtgggagcaggccaaggcactccaggaaggggcagagattgtt
gtgtgtaccccaggtcgactgattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtgtcttaccttgtgtttgatgaagcagatagaatgtttgacatgggatttgaataccag
gtgcggtccattgcaagtcatgttcgtcctgatagacagactctcttattcagtgcaact
tttcggaaaaagattgaaaaattggcccgagatatcctgattgatcctattcgagtcgtg
caaggagatattggagaggcaaatgaagatgtgacacaaattgtggaaattcttcattct
ggacccagtaaatggaactggctgacacggcgtctggtggagtttacctcttcagggagt
gtcctcctgtttgtgactaaaaaagccaatgctgaggagctagccaataaccttaagcag
gagggtcacaaccttgggttgctccatggggacatggatcagagtgaaagaaacaaggtc
atttcagactttaagaaaaaggacatacctgtcctggttgccacagatgttgcagcccga
ggtctggacatcccttctattaagactgtcattaactatgatgtggcacgagatattgat
actcatactcacaggattgggcgcactggacgagcaggagagaagggagttgcctatacc
ttgctgacccctaaggatagcaattttgctggtgacctagtccggaatttggaaggagcc
aatcagcatgtttctaaggaacttctagatctggcaatgcagaatgcctggtttcgaaaa
tcccgcttcaaaggagggaaaggcaaaaagctcaacattggcggaggtggcctaggctac
agggaaagacctgggctaggctctgagaatacggaccgaggcaataacaacaatgtcatg
agcaattatgaggcatacaagccctccacaggagccatgggagatcgactgacagcaatg
aaagcagctttccagtctcaatacaagagtcactttgttgctgccagcttaagcaatcag
aaagctggaagctcagctgctggggcaagtggatggactagtgcagggagtttgaattct
gttccaacgaattccacccaacaaggccataatagtcctgacagccctgtcgccagtgcc
accaaaggcatcccaagctttggcaattctgggaacctcagcagtgccccagtgacctac
ccttctccaggagcccaaggaatcaacaacacagttccagggactaacagccgagaaggg
attgggggtggcaatgggaaacgagagcgatatactgagaaccggggtggaagtcgtcat
agtcatggagagagtggcaatcgacatggtgacagtccacgtcatggagatggtggtcgc
catggagacggataccggtatccagaaagtagccgtcatactgatggccatcgacacggg
gaaaacaggcatggaggaggtggtggtggaggcagtagcagcagcagtggtggaggtgga
ggtggtggtggaggaggaggcggcggcggaggtggccggcatggggaaagcagaaatgca
aatgatggtcggaatggtgaaagcaggaaagaaagttgtaatcgtgaaagcaagatggac
aatagcaagatggacaagatggacagcaagacagataagacagctgatggctttgctgtt
cctgagccccccaaacgcaagaaaagtcgatgggacagttaa
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