Suncus etruscus (white-toothed pygmy shrew): 126017285
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Entry
126017285 CDS
T09902
Symbol
VPS16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04140
Autophagy - animal
setr04148
Efferocytosis
setr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
126017285 (VPS16)
04148 Efferocytosis
126017285 (VPS16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
126017285 (VPS16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
126017285 (VPS16)
Membrane trafficking [BR:
setr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
126017285 (VPS16)
Hops complex
126017285 (VPS16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
126017285
NCBI-ProteinID:
XP_049635107
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All DBs
Position
9:14117096..14157198
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AA seq
874 aa
AA seq
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MDCYTANWNPLGDSAFYRKYELYSMDWDLKDELRDCLVAAAPYGGPIAILRNPWRKEKSA
SIRPVLDIYSASGMPLANLLWKSGPVVSLGWSAEEELLCVQEDGVVLVYGLHGDFRRHFS
MGNEVLQNRVLDARIFHTEFGSGVAILTGAHRFTLSANVGDLKLRRMPEVPGLQSAPSCW
TTLFQERVVHVLLAVGPDLYLLDHAACSVVILPGLAPGVSSFLQMAVSFTNRHLALFTDT
GYIWMGTASLKEKLCEFNCNIRAPPKQMVWCSRPRSKERAVVVAWERRLMVVGDAPESIQ
FVLDEDSYLVPELDGVRIFSRSTHEFLHEVPVASEEIFKIASMAPGALLLEAQKEYEKES
QKADEYLREIQELGQLSQAVQQCIEAAGHEHHPDMQKSLLRVGLGSGLRAGPGAGNSAGS
RELAGLTLASPLLSFQAASFGKCFLDRFSPDSFVRMCQELRVLNAVRDYHIGIPLTYSQY
KQLTIQVLLDRLVLRRLYPLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVAR
AINQKLGDTPGVSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPLLLKMKRSKLALSKA
IESGDTDLVFTVLLHLKNELNRGDFFMTLRNQPMALSLYRQFCKHQELETLKDLYNQDDN
HQELGSFHIRASYAAEERIEGRVAALQTAADAFYKAKNEFAAKATEDQMRLLRLQRRLED
ELGGQFLDLSLHDTVTNLILGGHNKRSEQLARDFRIPDKRLWWLKLTALASMGDWEELEK
FSKSKKSPIGYLPFVEICMKQHNKYEAKKYASRVSPEQKVKALLLVGDVSQAADVAIEHR
NEAEMSLVLSHCTGATDGATVDKIQRARAQVLKK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atggactgctacacggccaactggaacccgctgggggactcggccttctaccggaagtat
gagctgtacagcatggactgggacctgaaagatgagctccgggactgtctggtggctgcc
gcgccctatggaggacctatcgcaatactaagaaacccctggagaaaagagaagtctgcc
agtatccgacctgtgctagatatctactctgcttctggcatgcctctggccaatctgctg
tggaagagtgggccagtggtgtccttgggctggtcagctgaggaggagctgctctgtgtg
caggaagatggcgtagtattggtgtatgggcttcatggagacttccggagacacttcagc
atgggcaatgaggtacttcaaaaccgggttctagatgcacgtatcttccatactgagttt
ggttccggggtggccatcctcacgggggcccaccgttttactcttagcgccaatgtgggg
gacctcaaactccgccggatgccagaggtgccaggtctgcagagcgcaccctcatgctgg
accacactgttccaggagcgtgtggtacatgttcttctggctgtggggcctgacctttac
cttctggaccatgcagcctgctctgtagtgatattgccaggcctggccccaggagtgagc
agcttcctgcaaatggcagtctcctttaccaacagacacctggcccttttcacagacaca
ggctatatctggatggggacagcatcactcaaggagaagctgtgtgagttcaactgcaat
attcgcgcccctccaaagcagatggtctggtgcagccgtcctcgaagcaaggagcgggcc
gttgtggtggcctgggagaggcgtctgatggtggtgggtgatgcacctgagagcatccag
tttgtgctggatgaagactcctatctggtacccgagctggatggggttcgtatcttttcc
cgcagtacccacgagttcctgcacgaggttccagtggccagtgaggagatcttcaaaatt
gcttccatggcccctggagcactgctgttagaggcccagaaggagtatgagaaagagagc
cagaaggcggacgagtacctgagggagatccaggagcttgggcagctgagccaggccgtc
cagcagtgcattgaggccgccgggcatgagcaccatcctgacatgcagaagagtctactc
cgggttggcctgggctcagggctgagagcagggccaggtgctggcaacagtgcaggcagc
agggagctggcagggctgacgcttgcctctcctctcctctctttccaggcggcctccttt
gggaagtgtttcctcgacaggttctcccctgacagctttgtgcgcatgtgtcaggagctg
cgcgtgctgaatgcagttcgggactatcacattggcatccctctaacctacagccaatat
aaacaactcaccatccaggtgctactggacaggcttgtgttgcggaggctttacccactg
gccatccagatctgcgagtacctgcggcttcccgaagtacagggtgtcagccgaatcctt
gctcactgggcctgctacaaggtacaacagaaagatgtgtctgatgaggatgtcgctcgg
gccattaaccagaagctaggagacacgcctggtgtctcttactcagatattgctgctcgg
gcctatggttgtggccgcacagagttggccattaagctgctggagtatgaaccacgctct
ggagagcaagtgcctcttctcttaaagatgaaacggagcaaactggccctgagcaaggca
attgagagtggagacacagacctggtgttcactgtgttgttgcacctgaagaatgagctt
aaccgaggtgactttttcatgacccttcggaaccagcctatggccctgagtctgtaccga
cagttctgcaagcatcaggagcttgagacactgaaggacctctacaatcaggatgacaac
caccaggagctgggcagcttccacattcgagccagctatgctgcagaggagcgcatcgag
ggccgagtcgccgctctgcagacagcagctgacgccttctacaaggccaagaatgagttt
gcagccaaggccacagaggatcaaatgcggctcctccggctacagcgccgcctggaagat
gaattgggtggccagtttctggacttgtccctacatgatactgtcaccaaccttatcctc
ggtggccacaacaagcgttcagagcagctggcccgagatttccgcatccccgacaagagg
ctctggtggctaaagctgactgccctggccagtatgggcgactgggaggagctagagaag
ttttcgaaaagcaagaaatcacctattggctacttgccctttgtggaaatctgcatgaag
cagcataacaaatatgaggccaagaagtatgcatcccgtgtgagtcccgagcaaaaggtt
aaggccttgcttcttgttggggatgtgtcccaggctgcagatgtagccattgagcaccgg
aacgaggcagagatgagccttgtgttatcccactgcactggagccactgatggggccaca
gtcgacaagattcagcgggccagggcacaagtcctgaagaagtga
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