KEGG   Suncus etruscus (white-toothed pygmy shrew): 126017658
Entry
126017658         CDS       T09902                                 
Symbol
DDB2
Name
(RefSeq) DNA damage-binding protein 2
  KO
K10140  DNA damage-binding protein 2
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03420  Nucleotide excision repair
setr04115  p53 signaling pathway
setr04120  Ubiquitin mediated proteolysis
setr05161  Hepatitis B
setr05169  Epstein-Barr virus infection
setr05200  Pathways in cancer
setr05202  Transcriptional misregulation in cancer
setr05210  Colorectal cancer
setr05212  Pancreatic cancer
setr05213  Endometrial cancer
setr05214  Glioma
setr05216  Thyroid cancer
setr05217  Basal cell carcinoma
setr05218  Melanoma
setr05220  Chronic myeloid leukemia
setr05222  Small cell lung cancer
setr05223  Non-small cell lung cancer
setr05224  Breast cancer
setr05225  Hepatocellular carcinoma
setr05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    126017658 (DDB2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    126017658 (DDB2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    126017658 (DDB2)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    126017658 (DDB2)
   05202 Transcriptional misregulation in cancer
    126017658 (DDB2)
  09162 Cancer: specific types
   05210 Colorectal cancer
    126017658 (DDB2)
   05212 Pancreatic cancer
    126017658 (DDB2)
   05225 Hepatocellular carcinoma
    126017658 (DDB2)
   05226 Gastric cancer
    126017658 (DDB2)
   05214 Glioma
    126017658 (DDB2)
   05216 Thyroid cancer
    126017658 (DDB2)
   05220 Chronic myeloid leukemia
    126017658 (DDB2)
   05217 Basal cell carcinoma
    126017658 (DDB2)
   05218 Melanoma
    126017658 (DDB2)
   05213 Endometrial cancer
    126017658 (DDB2)
   05224 Breast cancer
    126017658 (DDB2)
   05222 Small cell lung cancer
    126017658 (DDB2)
   05223 Non-small cell lung cancer
    126017658 (DDB2)
  09172 Infectious disease: viral
   05161 Hepatitis B
    126017658 (DDB2)
   05169 Epstein-Barr virus infection
    126017658 (DDB2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:setr04121]
    126017658 (DDB2)
   03400 DNA repair and recombination proteins [BR:setr03400]
    126017658 (DDB2)
Ubiquitin system [BR:setr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     126017658 (DDB2)
DNA repair and recombination proteins [BR:setr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      126017658 (DDB2)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C ANAPC4_WD40 EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_2nd Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_CAF1B_HIR1 Beta-prop_EML PEP5_VPS11_N WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_SPT8 WD_LRWD1
Other DBs
NCBI-GeneID: 126017658
NCBI-ProteinID: XP_049635652
LinkDB
Position
9:96866334..96889090
AA seq 427 aa
MAPRKRPETQKLFEMVVRPKSKRSRSPRELEPEAKQRRVKRPGSSRTFDSGCFGAGLASQ
QVPPPTRSIIKALHQHKLGQTAKPTLQQALQQSFLQSLASFRIFQRAAPFDRRATSLAWH
PTHSSILAVGSKGGDILLWNVSLKDEPIFLKGIGAGGSITGMKFNPLNTNQLFTSSMEGT
TRLQDFKGNTIRVYTSSNSCNVWFCSLDVSAQSRMVVTGDNRGQVSLLTMDGKEIWNLKM
HKKKVTHLALNPCCDWVLATASVDQTVKIWDLRQMKGSSSFLCSLPHCQGVNAASFSPSG
AQLLTTDQKNEIRVYSASQWDCPPLLIPHPHRQFQHLTPIKATWHPRHDLIVVGRYPDPN
FEGSDPYELRTIDVFDGNSGKMMYQICDPQSSGIISLNEFNPMGDTLASVMGYHVLVWNQ
KKTGTQK
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggctcccaggaaacgccccgagacccagaagctcttcgagatggttgtgcgccccaag
agcaagcggagcaggagtccccgggagctggaacccgaggccaaacagcgtcgtgtgaag
cgccccggttccagcaggacgtttgactcaggctgctttggggcgggcttggccagccag
caagtacccccgccaactagaagtatcatcaaggctcttcaccagcataaattgggccag
actgccaagccgacactgcagcaggctctccaacagtcctttttgcagtctctcgcttct
ttccggatattccaaagggctgccccctttgaccggagagccacatccttggcctggcac
ccaactcactccagcatccttgctgtgggttccaaaggaggcgatatcctgctctggaac
gtcagcctcaaggacgaacccatcttcctgaaagggattggcgctggagggagcattact
ggcatgaagtttaaccctctcaacaccaaccagctattcacctcctcaatggagggaaca
actagactgcaagactttaaaggcaacactatccgagtttataccagctcaaactcctgc
aacgtctggttctgcagcttggacgtttccgcccaaagtcgtatggtggtcacaggagac
aacagggggcaagtgagcctgctaaccatggacggcaaagagatttggaatctgaaaatg
cacaaaaagaaagtgacccacctggccctgaatccctgctgtgactgggtcctcgccaca
gcctccgtagaccagacagtgaaaatctgggacctgcgccagatgaaagggagctccagc
ttcctctgctccctgcctcactgccagggcgttaatgcagcttctttcagtcccagtggt
gcccagctcctgaccacagatcagaagaatgagatccgggtctactcagcctcccaatgg
gactgtcccccactcctgatcccacaccctcaccgccagttccaacatcttactcccatt
aaggccacctggcatcctcggcatgacctcattgttgtgggccgatacccggatcctaat
tttgaaggctctgacccttacgagttaaggactatcgatgtgtttgatggaaactcaggg
aagatgatgtatcaaatctgtgacccacaatcttcgggtatcatctcgctcaatgaattc
aaccccatgggtgacacgctggcctctgtgatgggttatcatgttctcgtctggaaccag
aagaaaactgggacacaaaaatga

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