KEGG   Suncus etruscus (white-toothed pygmy shrew): 126017912
Entry
126017912         CDS       T09902                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03420  Nucleotide excision repair
setr04120  Ubiquitin mediated proteolysis
setr05161  Hepatitis B
setr05170  Human immunodeficiency virus 1 infection
setr05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    126017912 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    126017912 (DDB1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    126017912 (DDB1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    126017912 (DDB1)
   05161 Hepatitis B
    126017912 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:setr04121]
    126017912 (DDB1)
   03400 DNA repair and recombination proteins [BR:setr03400]
    126017912 (DDB1)
Ubiquitin system [BR:setr04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     126017912 (DDB1)
DNA repair and recombination proteins [BR:setr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      126017912 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      126017912 (DDB1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd Beta_propel
Other DBs
NCBI-GeneID: 126017912
NCBI-ProteinID: XP_049635932
LinkDB
Position
9:complement(104962468..105006632)
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPTRE
TDDTLVLSFVGQTRVLMLNGEEVEETELLGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPRELRQISHTEMEHEVAC
LDITPLGESNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtggtaacggcccagaagcccaccgccgtgaacggctgcgtgacc
ggacactttacttcagctgaagacttaaacctgttgattgccaaaaacacgagattagag
atctatgtggtcaccgctgaagggcttcggcctgtcaaagaagtgggcatgtatgggaag
attgctgtcatggaacttttcaggcccaagggggagagcaaggaccttctgttcatcctg
acagccaagtacaatgcctgcatcttggagtataagcagagtggcgagagcattgacatc
ataacacgagctcatggcaacgtccaggaccggattggccgtccctcagagaccggcatt
attgggatcattgaccctgagtgccggatgatcggcctgcgcctctacgatggccttttc
aaggtcatcccgctagaccgggacaataaggagctcaaggccttcaacatccggctggag
gagctacatgtcatcgatgtcaagtttctctacggttgccaagcacctaccatctgcttt
gtgtaccaggaccctcaggggcggcatgtcaaaacctacgaggtgtctctccgagagaag
gagttcaacaagggcccttggaagcaggaaaatgtagaagctgaggcctccatggtgatt
gcagtcccagagccctttggaggggccatcatcatcggacaggaatcaatcacctatcac
aatggtgacaaatacctggcgattgctcctccgatcatcaagcaaagcacaattgtttgt
cacaatcgtgtggaccccaatggctcacgctacctgctgggagacatggaagggcgtctc
ttcatgctgctgctggagaaggaggagcagatggacggcaccgtcactctcaaggacctc
cgggtggagctcctaggagagacttccattgccgagtgcttgacctaccttgataatggc
gttgtgttcgttgggtctcgcctgggcgactcccagcttgtgaagcttaatgtagacagc
aatgaacaaggctcctacgtagtggccatggaaacctttaccaatttagggcccattgtg
gacatgtgcgtggtggatctggagaggcaggggcagggacagctggtcacttgctcgggg
gctttcaaggaaggttccttgcggatcatccggaatggaattggaattcacgagcatgcc
agcattgacttaccaggcatcaaaggcctctggccgcttcgctctgatcctacccgggag
accgatgacactctggtgctctcttttgtgggccagacaagagtgctcatgctcaacggt
gaagaggtggaagaaacagagctgctgggctttgtggacgaccagcagacgttcttctgc
ggtaacgtggctcatcagcaacttatccagatcacttcagcatctgtgaggttggtttct
caggagcccaaagccctcgtgagtgaatggaaagagccccagggcaagaacatcagcgtc
gcctcatgcaacagcagccaggtagtggtggccgtgggcagggcgctctactacctgcag
atccacccccgggagctccgacagatcagccacacagagatggagcacgaagtggcctgc
ttggacatcacccctttaggagagagcaacgggatgtctcctctgtgtgcgattggcctc
tggaccgacatctcggcccggatcctgaagctgccctcttttgaactcctgcacaaagag
atgctcggtggagagatcattccccgctccatcctgatgaccaccttcgagagtagccac
tacctcctctgtgccttgggagatggggcccttttctactttggactcaatattgagaca
ggcctgttgagcgaccgtaagaaggtgactctaggcacgcagcccacagttctaaggact
ttccgttctctttctaccaccaacgtctttgcttgctctgaccgccccactgtcatctac
agcagcaaccacaaattggtcttctccaatgtcaacctcaaggaagtcaactacatgtgt
cccctcaactcggatggctatcccgacagcttggccctggccaataacagcaccctcacc
attggcaccatcgatgagatccagaagctgcacattcgcactgtccccctctatgagtct
cccaggaaaatctgctaccaggaagtgtcccagtgtttcggggtcctttccagccgcatt
gaggttcaggacacgagtgggggcacgactgctctgaggcccagtgccagcacccaggcc
ctgtctagcagcgtcagctccagcaagctcttctccagcagcacagcccctcacgagacg
tcctttggggaagaggtggaggtgcacaacctgctcatcatcgaccagcacacctttgaa
gtgctgcacgcccaccagtttctgcagaacgagtatgccctcagcctggtgtcctgcaag
ctgggcaaagaccccaacacctacttcattgtgggcacagccatggtgtaccccgaggaa
gcagagcccaagcagggccgaattgtggtctttcagtactcagatggaaaactgcagact
gtggccgagaaggaagtgaagggggccgtgtactccatggtggagtttaacgggaagctc
ttagccagcatcaatagcacggtgcggctttacgagtggaccacggagaaggagcttcgc
accgagtgcaatcactacaataacatcatggccctctacctgaagaccaagggcgacttc
atcctggtgggcgacctgatgcgctccgtgctgctgctcgcctacaagcccatggagggc
aacttcgaagagattgctcgagacttcaaccccaattggatgagcgcggtggaaatcttg
gatgatgacaatttcctgggggctgaaaacgcgtttaacttgtttgtgtgtcagaaagac
agcgccgccaccaccgatgaggagcggcagcacctgcaggaagttggcctcttccacctg
ggcgagtttgtcaatgtcttctgccacggttccctggtcatgcagaacctgggcgagacg
tccactcccacccaaggctcggtgctcttcggcacggtcaatggcatgatcggcttggtg
acctcactgtcagagagctggtacaacctcctgttggacatgcagaatcgactcaataaa
gtcatcaaaagtgtgggcaagatcgagcactctttctggagatccttccacactgagcgg
aagacggaaccggccactggcttcatcgatggggacttgatcgagagtttcttggatatc
agccggcccaagatgcaggaggtggtggccaacctacagtatgacgacggcagcgggatg
aagcgcgaggccactgccgacgacctgatcaaggtggtggaggagctcacgaggatccac
tag

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