Suncus etruscus (white-toothed pygmy shrew): 126017919
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Entry
126017919 CDS
T09902
Symbol
NXF1
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03008
Ribosome biogenesis in eukaryotes
setr03013
Nucleocytoplasmic transport
setr03015
mRNA surveillance pathway
setr05014
Amyotrophic lateral sclerosis
setr05164
Influenza A
setr05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126017919 (NXF1)
03015 mRNA surveillance pathway
126017919 (NXF1)
03008 Ribosome biogenesis in eukaryotes
126017919 (NXF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
126017919 (NXF1)
05168 Herpes simplex virus 1 infection
126017919 (NXF1)
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
126017919 (NXF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126017919 (NXF1)
03009 Ribosome biogenesis [BR:
setr03009
]
126017919 (NXF1)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
126017919 (NXF1)
mRNA cycle factors
Stress granule specific factors
126017919 (NXF1)
Ribosome biogenesis [BR:
setr03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
126017919 (NXF1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_4
LRR_8
UBA_8
RRM_NXF1-2
Citrulline_exp
Motif
Other DBs
NCBI-GeneID:
126017919
NCBI-ProteinID:
XP_049635938
LinkDB
All DBs
Position
9:complement(107014457..107026412)
Genome browser
AA seq
620 aa
AA seq
DB search
MADEGKSYNEHDDRVSFPQRRRKGRGPFRWKYGEGNRRPGRGGAGMRVARLEDEDRDVAM
SDAQDGPRVRYNPYVPRPNRRGGDAAWHDRDRIHVTVRRDRAPQDRGAASTSQDRAAKNW
FKITIPYGRKYDKSWLLNMIQSKCSVPFTPIEFHYENTRAQFFVEDASTATALKAVNYKI
VDQENRRISIIINPSAPPQTVQNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRTDPDLV
AQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLFRLDEMVTIVQKAPNVKILNLS
GNELKSERELDKIKGLKLEELWLDGNPLCDSFRDQSTYISAVRERFPKLLRLDGHELPPP
IAFDVEAPTTLPPCKGSYFGTETLKNLVLHFLQQYYAIYDSGDRQGLLDAYHDGACCSLS
IPFTPHNPARSNLAEYFKDSRNVKKLKDPTLRFRLLKHTRLNVVAFLNELPKTQHDINSF
VVDISAQTSTLLCFSVNGVFKEVDGKSRDTLRAFTRTFIAVPASNSGLCIVNDELFVRNA
SPDEIQRAFAMPAPTPSSSPVPTLSPEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRS
AQAFTLLKAKDKIPEVAFMK
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaggggaagtcgtacaacgagcatgatgaccgcgtcagcttccctcaaagg
aggaggaaaggccgtggtccttttcggtggaaatatggcgaagggaaccgtcggccagga
agaggaggtgctggcatgcgggtagcccgccttgaggacgaggacagagatgtggcaatg
agtgatgcccaggacgggccccgagtgcgttataacccctatgtcccgagacccaaccgt
cggggaggtgacgccgcctggcatgatcgggaccgcattcacgtcactgtgcgaagggac
agagcgccccaagacagaggtgctgccagcaccagtcaggacagagcagccaagaactgg
ttcaaaattacaattccttatggtagaaaatatgacaagtcgtggctcctgaacatgatt
cagagcaaatgcagcgttccttttactcccattgagtttcactatgaaaacactcgggcc
cagttttttgtggaggatgccagcactgccactgccctgaaggccgtcaactataagatc
gtggatcaggagaaccggaggatatccatcatcatcaacccctcagctccgccccagact
gtccagaacgagctgaagcccgagcaggtggagcagctaaagctgatcatgagcaaaagg
tacgatggttcccagcaagcactggacctcaaagggctccgcacagacccagatttggtg
gcccagaacatcgacgtagtcctgaaccgaagaagctgtatggcggcgacactgcggatt
atcgaggagaatatccctgagctcttatccttgaacttgagcaacaacaggctcttcagg
ctggatgagatggtcaccatcgtgcaaaaggcccccaacgtgaagatcctcaacctctcg
ggaaacgagttgaagtcagagcgggagctggacaagatcaaaggcctgaagctggaggag
ctgtggctggacgggaacccgctgtgcgactccttccgggaccagtccacctacattagc
gccgttcgtgagcgattccccaaactattgcgcctggatggccatgagttacccccgccc
attgcctttgacgtggaggcccccacgacgctgccgccctgcaagggaagctacttcggc
accgagaccctaaagaatctggtcctgcacttcttacagcagtactatgcgatctatgac
tccggggaccgacagggcctcctggatgcctaccacgatggggcctgctgctccctgagc
atcccctttacgccccataaccctgcacgaagtaacctagctgagtacttcaaggacagc
aggaatgtgaagaagctgaaagaccctaccctgaggtttcgtctactgaagcacacgcgg
ctcaacgtcgtcgccttcctcaatgagttgcccaaaactcagcatgacatcaattccttc
gtggtagacataagtgcccaaacaagcacactgctgtgtttctccgtcaatggtgtcttt
aaggaagtggacggaaagtcccgggacacccttcgagccttcacccggaccttcattgct
gtgcccgccagcaattcagggttgtgcatcgtgaatgacgagctgtttgtacggaacgcc
agccctgatgagatccaaagagcctttgccatgcctgcacccacgccttcctccagtccc
gtgcccaccctctctccagagcagcaggaaatgctgcaggccttctccacccaatccggc
atgaacctcgagtggtcccagaagtgtcttcaagacaacaattgggactacaccaggtct
gcccaggcctttactcttctcaaggccaaggacaagattcccgaagtagctttcatgaag
tga
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