Suncus etruscus (white-toothed pygmy shrew): 126018030
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Entry
126018030 CDS
T09902
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04120
Ubiquitin mediated proteolysis
setr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126018030 (SYVN1)
04120 Ubiquitin mediated proteolysis
126018030 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
setr04121
]
126018030 (SYVN1)
Enzymes [BR:
setr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126018030 (SYVN1)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126018030 (SYVN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-RING-like
zf-ANAPC11
zf-HC5HC2H
zf-Nse
zf-C3H2C3
Endonuclease_7
Prok-RING_4
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
126018030
NCBI-ProteinID:
XP_049636081
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All DBs
Position
9:complement(108991687..108998005)
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AA seq
617 aa
AA seq
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MFRTAVMMAASMALTGAVVAHAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKV
MGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISCLFHFRILSLMCLLGVLDFFFVSHAYHSILTRGASVQLVFGFEYAI
LMTMVLTIFIKYVLHSVDLQSGNPWDNKAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQAMDNVCIICREEMVT
GAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPSQSPPPPEPAEQGPPPAAHPP
PLLPQPPNFPHGLLPPFPPGMFPLWPPMAPFPPVPPPPSSGEAAAPPSTGAGTLSRPPSA
SASPPGPEASATAAATAGFPFPPPWMSMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGH
ERQHLEARLQSLRNIHTLLDAAMLQINQYLTVLASLGPPQPAASVPPAEEPAPTAVPAAA
STSTPSTEVATSPPGASPSPSTAEAEKPPAPETVGATEGATAGATAVATEEQLEDGEPDA
AELRRRRLQKLESPVAH
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgttccgcaccgccgtgatgatggcggccagcatggcactgaccggggccgtggtggct
catgcctactacctcaagcaccagttctaccccaccgtggtctacctgaccaagtccagc
cccagcatggccgtcctgtacatccaggccttcgtgctggtcttcctcctgggcaaggtg
atgggaaaggtgttctttgggcaactgcgggcggcagagatggagcaccttctggaacgt
tcctggtatgctgtcaccgagacatgtttggcctttactgtttttcgggacgacttcagt
ccccgcttcgtggccctcttcaccctcctcctcttcctcaagtgtttccactggctggct
gaggaccgcgtggactttatggaacgaagccccaacatctcctgtctctttcacttccgc
atcctgtcccttatgtgcctgctgggtgtcctggacttcttcttcgtcagccatgcctat
cacagcatcctgacccggggggcctctgtacagctggtgtttggcttcgagtacgccatc
ctgatgaccatggtcctcacaatcttcatcaaatacgtgctgcactcggtggacctgcag
agcggcaacccctgggacaacaaggccgtttacatgctgtacacggagttgttcacaggc
ttcatcaaggttctgctgtacatggccttcatgaccatcatgatcaaggtgcacaccttc
ccgctcttcgccatccggcccatgtacctggccatgaggcagttcaagaaagctgtgaca
gatgccatcatgtcacgccgggccattcgcaacatgaacacactgtatcccgacgccacc
ccagaggacctgcaggctatggacaatgtctgcatcatctgtcgggaggaaatggtgacg
ggggccaagaggctgccctgcaaccacatcttccacaccagctgcctgcgctcctggttc
cagcggcagcagacctgccctacctgccgcatggatgttctgcgggcctcgctgccctcg
cagtcgccaccgccccccgagcctgcagagcagggaccaccccctgctgctcatcccccg
cccctcctgccccagccccccaattttccccacggccttctgcctcccttccctccaggg
atgttcccactgtggccccccatggctcctttccctcctgtcccacctccccccagctcg
ggagaggccgcagcccctccgtccaccggtgcaggaacgctctctcggcctcccagtgca
tctgcttctccccctggccccgaggccagcgccaccgctgcggccaccgccgggttcccc
ttccccccgccctggatgagcatgcccctgccaccacctttcgccttcccaccaatgccg
gtgccccccgctggcttcgctgggctgaccccggaggagctgcgggccctagagggccac
gagcgacagcacctggaggcgcgtctgcagagcctgcgcaacatccacacgctgctggac
gccgccatgctgcagatcaaccagtacctcactgtgctcgcctccctggggcccccccag
cctgccgcctccgtccccccggctgaggaacctgcccccacagcggtcccagctgccgcc
tccaccagcacccccagcacagaggttgccacctcacccccaggagcatccccgtccccg
tccaccgcagaggccgaaaagcccccagcccctgagacagtgggcgccaccgagggtgcc
accgcgggtgccaccgcagtcgccacagaggagcagctggaggacggtgagccggatgcc
gccgaattgcgccgccgccgcctgcagaagcttgagtcaccggtcgcccactga
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