Suncus etruscus (white-toothed pygmy shrew): 126018383
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Entry
126018383 CDS
T09902
Symbol
PABPC1L
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126018383 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
126018383 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126018383 (PABPC1L)
03041 Spliceosome [BR:
setr03041
]
126018383 (PABPC1L)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126018383 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
126018383 (PABPC1L)
Spliceosome [BR:
setr03041
]
Complex C
Other components
Complex C specific factors
126018383 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_Nup35
RRM_10
Motif
Other DBs
NCBI-GeneID:
126018383
NCBI-ProteinID:
XP_049636489
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All DBs
Position
9:25815861..25847274
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AA seq
653 aa
AA seq
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MAQAPGAAHAGAQAEAPPPSSGAVSSSSPSSSYPLASLYVGDLHPDVNESMLFEKFSPAG
PILSIRVCRDVTTRRSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPRLRK
SGVGNIFIKNLEDSIDSKALYDTFSTFGNILSCKVVCDNHGSKGFGFVHFETQEAAKRAI
STMNGMLLNDHKVFVGQFKSRREREMEMGTQAKEFTNIYVKNLHVDLDESGLQKLFSPFG
KMLSVKVMRDSSGHSRGFGFVNFEKHEEAQKAVTGINGKEMNGKLLYVGRAQKWLERQNE
LKLRFEQLKQDRLNRYQGVNLYVKNLDDSIDDKKLRKEFSLYGVITSAKVMTEGDHSKGF
GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKAERKAILTNQYMQRMSTVRALGGP
LVSSFQQPPNYFLPAVPQPQAQATTYYGSVAPMQPAPRWMAQPSRSSAAYHQAISTTRTP
AVSSGHSQVHLSNIGEASTLGQNPVPHQRVANIGTQTSDLCGAGSSLQESPIRPHLYSST
IHTVCRLKRNVPACMQFQEPAERVPRREPLSASMLASALPHVQKQMIGDRLYPLIYALHS
ELAGKITGMLLEIDNSELLHMLESPESLNAKVEEALIMLQAHQAEEQTDTNVQ
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggctcccggggcagcgcacgcgggggcccaggcggaggccccgccgcccagc
tccggtgctgtgagctccagcagccccagctccagctacccgctcgcctcgctctacgtg
ggcgacctgcacccagatgtgaacgagtccatgctcttcgagaagttctcgcctgcaggg
cccatcctgtccatccgcgtgtgccgcgacgtgaccacccgccgctcgctgggctatgcc
tacatcaacttccagcagccggccgacgcggagcgggcattggacacaatgaacttcgag
gtgatcaaaggtcaacccatccgcattatgtggtcccagagagacccaaggctccgcaag
tcaggcgtgggcaacatcttcatcaagaatctggaggactccattgatagcaaagctttg
tatgacaccttctccacctttgggaacattctctcctgtaaggtggtgtgtgacaatcat
ggctccaaaggcttcggctttgtccacttcgagacccaggaagcagctaagcgtgcgatc
agcaccatgaacgggatgctactgaacgaccacaaagtctttgtgggccagttcaagtcc
cgccgggagcgggaaatggagatgggcacacaggctaaggagttcaccaacatctatgtg
aaaaacctgcatgttgacttggatgagagtggcctgcagaaactcttctccccatttggg
aagatgctgagtgtgaaggtgatgagagacagcagtggccattcccgaggctttggcttt
gtcaactttgagaagcatgaggaagctcagaaggcggtgacaggcataaatgggaaggag
atgaatgggaagctgctgtacgtgggccgggcccagaagtggctggagaggcagaatgag
ctcaagctcagatttgagcagttgaagcaggatcgactgaaccggtaccagggtgtaaac
ctctatgttaagaacctggatgactctattgatgataagaaactgaggaaggagttctcc
ctctatggagtcatcaccagtgcgaaggtgatgacagaaggtgatcacagcaaagggttt
ggctttgtgtgtttttcttctccagaagaagcaaccaaggctgtgacagagatgaacggg
cgcattgtgggcaccaagccgctctatgtggcactggcccaacgcaaagcagagcgcaag
gccatcttgaccaaccagtacatgcaacgcatgtccaccgttcgggccctgggagggccc
ctcgtgagctccttccagcagccccctaactacttcctgcctgctgtgccccagcctcag
gcccaggctactacatactatggctctgtagcgcctatgcagcctgcccccaggtggatg
gcccagccctcaagatcctccgctgcctaccatcaagctatctcaacaacccggacacct
gctgtgtcttcggggcactcccaggtccacctcagcaacatcggagaggcctctactctg
gggcaaaacccagttccccaccaaagagtggccaacattgggacccagacctcagatctc
tgtggcgcaggctcctctctgcaggaaagtcctatcaggccgcatctatattcctccacg
atacacaccgtctgcaggctaaagaggaatgtcccggcctgcatgcagttccaggagcct
gctgaacgtgtccccagaagggagcccctgagtgcttccatgctggcctcggcgctgcct
catgtgcagaagcagatgattggtgatcggctctaccccctcatctatgctcttcacagc
gagttggcaggcaaaatcacgggcatgctgctggagattgacaactcagagctgctgcac
atgctggagtcccctgagtccctcaatgccaaggtggaagaggctctgataatgcttcag
gcacaccaggccgaggagcagacggacacaaatgtgcaatga
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