Suncus etruscus (white-toothed pygmy shrew): 126018430
Help
Entry
126018430 CDS
T09902
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 2-like
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
setr04040
]
126018430
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
126018430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRCC1_N
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Motif
Other DBs
NCBI-GeneID:
126018430
NCBI-ProteinID:
XP_049636526
LinkDB
All DBs
Position
9:52013280..52056220
Genome browser
AA seq
1257 aa
AA seq
DB search
MAPVRISHVVSFSSQDPKYPVENLLDPDSQRGPWLSCPRDKSGQLKVELQLEKAVTIGYI
DVGNCGCAFLQIDVGRSSWPLDRPFVTLLPATMLMSLMDSKQGKNRSGVRMFKNGDFLSP
ASSDTWDRLRLTCSQPFTRYQSFGLTFLRVCSSLDSSDDAVLDSSTPGSSGVSQGFSQVH
ESDPSPWMTNPSIRRTFFPDPPKTTKEISNLKNMLKQLQPGTLGRSAQMVLSAACKASPA
SVPSPANNHREPGSSQTVQSPDLRTKTVSDVHRKKKQKTQGVQACELVSNSSSQPSRKRK
AKAEEKGHSLPQTQVSSIQKSGQCPICAGIFSMAVLPQHAATCGEPTPPHPSPSPSPPSV
LRFLHMAXTPGPLVSKPNWNEIVNKKLKFPPPLLGAIQEGRLGLVQQLLESGVEAPSSGA
SGPPRQVEEAEDRSWREALNLAIRLGHEAIMDVLLANVKFDFRQIHEALLVAVDSNQPAV
VRRLLARLDREKGRKVDTRSFSLAFFDSSIDGSRFAPGVTPLTLACQKDLYEIAQLLMEQ
GHSIARPHPVSCACLECSNARRYDLLKFSLSRINTYRGIASRAHLSLASDDAMLAAFQLS
RELRRLARKEPEFKPEYIALESLSQDYGFELLGMCRNQSEVTAVLNDLGEDSETEAEVLG
QAFEEGIPNLARLRLAVNYNQKRFVAHPICQQVLSSIWCGNLAGWRGSTTIWKLFVAFLI
FLTMPFLCLGYWLAPKSRLGRLLKIPVLKFLLHSASYLWFLLFLLGESLAMEMQLSTFRG
RSQSVWETSLHMVWVTGFLWFECKEVWIEGLRSYLLDWWNFLDVVILSLYLAAFVLRLLL
AGLAHMHCRDDPEGALCHYFTTADRTEWRTEDPQFLAEVLFAVTSMLSFTRLAYILPAHE
SLGTLQISIGKMIDDMIRFMFILMIILTAFLCGLNNIYVPYQETERLGNFNETFQFLFWT
MFGMEEHSVVDMPQFLVPEFVGRALYGIFTIVMVIVLLNMLIAMITNSFQKIEDDADVEW
KFARSKLYLSYFREGLTLPVPFNILPSPKAIFYLLRKMFRLFCCCCSCCKTRKPNYPPIP
IFANRGAGSEPGEGEHERGSYRLRVIKALVQRYIETARREFEESRRKDLGTRLTELTKTV
SRLQGEVAGVRRALVEGGAPRPPEGASVLSRYITRVRNSFQNLGPPIPETPELVMPGMME
TQESQELGQQSSRGAQEPAPGEPVPSSPAHVLVHREQEPEGTGELALEEDAGATGEP
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggctcctgtgaggatcagccacgtggtatcattttcttctcaggatcccaagtatcct
gtggagaacttactggacccagacagtcagagaggaccttggcttagctgccctcgtgac
aagagtggccaactaaaagtggaattacagctagagaaagcagtgaccattggctacatc
gatgtgggtaactgtggctgtgctttcctgcaaattgatgtgggccgttcttcctggccc
ctggacagaccttttgtcaccctgctccctgcaaccatgttaatgtccctcatggattca
aagcaagggaaaaatcgctcaggggtccgtatgtttaaaaatggtgatttcctctctcct
gcctccagtgacacctgggatcgacttcgccttacctgctcccagcccttcacacgttac
cagtcctttggcctgaccttcctgcgggtgtgttcttcactggactcttcggatgatgct
gtcttggattcctcaacccctggaagttcaggagtgagccagggtttttctcaggttcac
gagtctgatccaagcccttggatgactaatccttccatccggagaacattcttcccagat
cccccaaagaccaccaaggaaatctccaaccttaagaatatgctaaaacagctgcagcca
gggactttgggtcgttcagcccagatggtgctgtctgctgcttgcaaagcttctccagcc
agtgtaccaagtccagcgaacaatcacagagaaccaggttcaagtcagacagtgcagagt
ccagacctgagaaccaaaacagtgagtgatgtgcacagaaaaaagaaacagaagacacag
ggggtccaagcctgcgaacttgtctccaactccagctcacagccaagcaggaaaaggaaa
gcaaaggcagaagagaaaggacattccctaccccagacccaagtcagctccatccagaag
agtgggcagtgccccatttgtgcaggcatcttcagcatggcagttctcccccagcacgca
gccacctgtggagagcctacaccgccacacccttctccctccccttcaccaccatccgtc
ctaagatttcttcacatggcatgaacaccaggtcccctggtctccaagcccaactggaat
gagatcgtcaacaaaaagctgaagttcccacctccactgttgggggccatccaggagggg
cggctgggcctggtgcagcagctactggagtcaggtgtcgaggccccaagcagtggggca
agtgggcccccgcggcaggtggaggaggcagaggaccggtcctggagggaagctctcaac
ttggccatccgcctgggccatgaagccatcatggacgtcctgttggctaatgtcaagttc
gacttccgacagatccacgaggccctgctagtggccgtggattcgaaccagccagctgta
gtgcggcgactgctggcccggcttgaccgggagaagggccgcaaagtagacacacggtcc
ttctcattggctttcttcgactcttccatcgacggctcccgttttgcaccaggggtcacg
cccctcaccctggcttgccagaaagatctgtacgagatcgcgcagctgctcatggagcag
ggccacagcattgcccggcctcaccccgtctcctgcgcctgcctcgaatgcagcaatgcc
cgccgttatgacctgctcaagttctccctgtcgcgcatcaacacctaccgtggcattgcc
agccgggcacatctctcactagccagtgatgacgccatgctggccgccttccagctcagc
cgggagctcaggcgcctggcacgcaaggagccagagtttaagccagagtacatcgctctg
gagtcactgagccaggactacggctttgaactgctgggcatgtgccggaaccagagcgag
gtcactgcagtgctcaatgacctgggtgaagacagcgagacggaggccgaggtcctggga
caggccttcgaggagggtatccccaacctggcaagactgcggctggctgtcaactacaac
cagaagcggtttgtagcacaccccatctgccagcaagtgctgtcctccatctggtgtggg
aacctggctggctggcgtggaagcaccaccatctggaagctcttcgttgccttcctcatc
ttcctcaccatgcccttcctctgcctgggctactggctggcaccaaaatccaggctgggt
cgcctgctaaagatacctgtgctgaagttcctgctgcactcggcctcctacttgtggttc
ctcctcttcctgctcggagagtccctggccatggagatgcagctgagcacattccgaggt
cgtagccagagtgtctgggaaacttcactacacatggtttgggtcacagggttcttgtgg
ttcgagtgcaaggaggtgtggatcgagggccttcgcagttacctcctggattggtggaac
ttcctggacgtggtcatcctgtccctgtacctggcagccttcgtgctccggctcctcctg
gctgggctggcccacatgcactgccgtgatgaccccgagggagccctgtgccactatttc
accacggctgatcgaactgagtggcgcacagaggacccccagttcttggcagaggtgctc
ttcgcagtcaccagcatgctgagcttcacccgcctggcctacatcctgccggcccacgag
tccctgggcacgctgcagatctccattggcaagatgatcgatgatatgatcaggttcatg
ttcatcctcatgatcatcctgactgccttcctttgtggcctcaacaacatctatgtgccc
tatcaggagacagagcgtctgggcaatttcaatgagacattccagtttctattctggacc
atgttcggcatggaggaacacagtgtggtagacatgcctcagtttctggtgccagaattt
gtgggccgggctctatatggcatcttcaccatcgtcatggtcatcgtgctgcttaacatg
ctcattgctatgattaccaattccttccagaagattgaggatgatgcagatgtggaatgg
aagtttgctcgctccaagctctacctgtcctacttccgcgaaggcctgactctgcctgtg
cctttcaacatcctgccctcacccaaggccatcttctaccttctcaggaaaatgttccgg
ctcttttgctgttgctgttcctgctgcaagaccaggaagccaaactatcccccaattccc
atctttgccaatcgtggggcagggtcagagcccggggagggagagcatgagcgtgggtcc
tatcgccttcgtgtcatcaaggccctggttcagcgttacatagagaccgccaggcgggag
tttgaagagtctcgtcggaaagatctgggcacccggctcactgaactgaccaagactgtg
tcccgactgcaaggggaggtcgctggtgtgcggcgcgctctggtggaaggaggggcacct
cgaccccctgaaggtgccagcgtgctcagtcgctacatcacccgagtgcggaacagcttc
cagaacctgggaccccccatccctgagacaccagagctggtgatgccagggatgatggag
acccaggaatctcaggaactggggcagcagagttctagaggggctcaggagcctgctcct
ggagagcctgtcccatcctcacctgctcatgtactagtgcacagggagcaggaaccagaa
gggacaggagagctggccctggaggaagatgcaggggccacaggtgagccctga
DBGET
integrated database retrieval system
