Suncus etruscus (white-toothed pygmy shrew): 126018896
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Entry
126018896 CDS
T09902
Symbol
COPB1
Name
(RefSeq) coatomer subunit beta
KO
K17301
coatomer subunit beta
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
126018896 (COPB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
126018896 (COPB1)
Membrane trafficking [BR:
setr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
126018896 (COPB1)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
126018896 (COPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Coatomer_b_Cpla
Coatamer_beta_C
HEAT
HEAT_2
Cnd1
HEAT_EZ
Arm
MMS19_N
AP4E_app_platf
Motif
Other DBs
NCBI-GeneID:
126018896
NCBI-ProteinID:
XP_049636953
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Position
9:complement(64536361..64584575)
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AA seq
953 aa
AA seq
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MTAAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILNGEKLPGLLM
TIIRFVLPLQDHTIKKLLLVFWEIVPKTTPDGRLLHEMILVCDAYRKDLQHPNEFIRGST
LRFLCKLKEAELLEPLMPAIRACLEHRHSYVRRNAVLAIYTIYRNFEHLIPDAPELIHDF
LVNEKDASCKRNAFMMLIHADQDRALDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPS
ERARFIRCIYNLLQSSSPAVKYEAAGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLI
VLDRLIELKEHPAHERVLQDLVMDILRVLSTPDLEVRKKTLQLTLDLVSSRNVEELVIVL
KKEVIKTNNVSEHEDTDKYRQLLVRTLHSCSVRFPDMAANVIPVLMEFLSDNNEAAAADV
LEFVREAIQRFDNLRMLIVEKMLEVFHAIKSVKIYRGALWILGEYCSTKEDIQSVMTEVR
RSLGEIPIVESEIKKEAGELKPEEEITVGPVQKLVTEMGTYATQSALSSSRPTKKEEERP
PLRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSL
PKKPITDDDVDRISLCLKVLSECSPLMNNIFNKECRESLSHMLSAKLEEEKLSQKKESEK
RNVTVQPDDPIAFMQLTAKNEMNCKEDQFQLSLLAAMGNTQRKEAADPLASKLNKVTQLT
GFSDPVYAEAYVHVNQYDIVLDVLVVNQTSDTLQNCTLELATLGDLKLVEKPSPLTLAPH
DFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEF
RQMWAEFEWENKVTVNTNIIDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSI
FGEDALANVSIEKPIQQGPEAAVTGHIRIRAKSQGMALSLGDKINLSQKKNSL
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgctgagaatgtgtgctatacgttaattaacgtgccgatggattccgaacca
ccatccgaaattagcttgaaaaatgatctagaaaaaggagatgtgaagtcaaagactgaa
gctttgaaaaaagtaatcatcatgattctgaatggtgaaaaacttcctggacttctgatg
actatcattcgatttgtgctacctcttcaggatcatactattaaaaagttacttctggtg
ttttgggaaatagttcctaaaacaactcctgatggaagacttttacatgaaatgatcctt
gtatgtgatgcatatagaaaggatcttcaacatcctaatgaatttatccgaggatcaact
cttcgtttcctttgcaaattgaaagaagcagaattgctggaacctctcatgccagctatc
cgtgcctgtttggagcatcggcacagctatgtcagaagaaatgctgttttggccatctat
actatctatagaaattttgaacatcttatacctgatgctcctgaactaatacatgacttt
ttggtgaatgagaaggatgcaagttgcaaaaggaatgcatttatgatgctaattcatgca
gatcaggatcgagctttggattacctaagtacttgtattgatcaagttcaaacatttgga
gacattcttcaattggttattgttgaactaatttacaaggtctgccatgctaacccatct
gaaagggctcgtttcattcgctgcatctataacttgttacaatcatcaagccctgctgta
aagtatgaagccgctggaacattagtgacactttctagtgcacctactgcaatcaaggct
gctgctcaatgttacattgatttaattattaaggagagcgacaacaatgtaaagctcata
gttcttgatcgattgatagaactaaaagaacatcctgctcatgaacgagtactacaggat
ttggtcatggatatcttaagagttttgagtacaccagatttggaagtgcgaaagaaaact
ctgcagttaacattagatcttgtctcttctaggaatgttgaagagctggttattgttctg
aagaaggaagtgattaagacaaataatgtgtctgagcatgaggatactgataaatacaga
cagcttcttgtgcgaacattgcattcctgttctgttcgatttccagatatggctgcaaat
gttattcctgtgctaatggaatttctgagtgacaataatgaagcagcagctgctgatgtc
ttggagtttgttcgtgaagccattcaacgctttgataacctgagaatgcttattgtggag
aagatgcttgaagtctttcatgctattaaatctgtcaagatttaccgaggagcattatgg
atcctgggagaatattgtagtactaaggaagatattcaaagtgtaatgacagaggttcga
aggtcccttggggagatcccaattgtagagtcagaaataaagaaagaagctggtgaatta
aaacctgaggaagaaataactgtggggccagttcagaaattggtaactgagatgggcacc
tatgcaactcagagtgctctgagcagttccagacccaccaagaaagaggaagaaagacct
cccctgagaggatttcttctggatggtgatttttttgttgctgcctcccttgccacaaca
ttgaccaagattgctttgcgctatgtagctttggttcaggaaaagaaaaagcaaaattct
ttcgttgctgaagctatgttgctcatggccacaattcttcatttgggaaaatcctctctt
cctaagaagcctattacagatgacgatgtagatcgaatttccctttgtctcaaagtcttg
tctgaatgttcacctttaatgaataacattttcaataaggaatgcagagaatccctttct
catatgttatctgctaaacttgaagaagagaaattatctcaaaagaaagaatctgaaaag
agaaatgtgacagtacaacctgatgatcccattgcctttatgcaacttactgctaagaat
gaaatgaactgcaaagaagaccagtttcagctgagcttgcttgcagcaatgggaaacaca
cagaggaaagaagcagcagatcccttagcatctaaactaaacaaggtcactcagttgacg
ggtttctcggatcctgtatatgcagaagcttatgttcatgtcaatcaatatgatatcgtc
cttgatgtacttgtggtgaaccaaaccagtgatactttacagaactgcacattagagtta
gctactctaggggatctgaaacttgtggaaaagccatctcctttgactcttgcacctcat
gattttgcaaatattaaagctaatgtcaaagtagcatcaacagaaaatggaataattttt
ggcaatatagtgtatgatgtctctggagcagcaagtgacagaaattgtgtggtcctcagt
gatattcacattgacatcatggactacattcagcctgcaacttgtactgatgctgagttc
cgtcagatgtgggctgaatttgaatgggaaaacaaagtgacagttaatacaaatataatt
gatttaaatgactatttacaacacatattaaagtcaaccaacatgaaatgccttactcca
gagaaggcactttctggttactgtggctttatggcagccaacctctatgctcgttctata
tttggagaagatgcacttgcaaatgtcagcattgagaagccaattcaacagggaccagaa
gccgctgttacaggccacataaggattcgtgcaaagagtcagggaatggccttaagtctt
ggagataaaataaatttgtctcagaagaaaaacagtttataa
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