Suncus etruscus (white-toothed pygmy shrew): 126020001
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Entry
126020001 CDS
T09902
Symbol
VPS18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog isoform X1
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04140
Autophagy - animal
setr04148
Efferocytosis
setr05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
126020001 (VPS18)
04148 Efferocytosis
126020001 (VPS18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
126020001 (VPS18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
setr04131
]
126020001 (VPS18)
Membrane trafficking [BR:
setr04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
126020001 (VPS18)
Hops complex
126020001 (VPS18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_Vps41
zf-RING_5
zf-C3HC4_2
zf-RING_16
zf-ANAPC11
KNOX2
zf-RING_2
zf-RING_UBOX
zf_RING_Vps8
zf-rbx1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
126020001
NCBI-ProteinID:
XP_049637392
LinkDB
All DBs
Position
10:complement(95838313..95855393)
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AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLPPGCPTVGIPHSGYVNAQLEKEVPIFTKQRIDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKANEPNHLELGRKDDAKVHKMFLDPTGSHLLIALSSTE
VLYVNRNGQKVRPLARWKGQLVESVGWNKALGTESSTGPILVGTSQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLSEEGGPAPVCSLEAERGPDHRLFVIATTRQRLFQFIGRTAETAE
AQGFSGLFLAYADHPPPFREFPSSLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGALDCT
RPDSLLSEERVWEYPEGMGPQASPPLAIALTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
DKFGPLRHLAKDPSTGHLWAHTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFGQRRYLESARCYALTQGYFEEIALKFLEARQEEALAEFLQHKLAGL
KPTERTQATLLTTWLTELYLSRLGALQGDPEALGLYRDTRERFRAFLGSPRHKEWLFASR
ASIHELLASHGDAEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIEMGGRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASSHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQQEMEEATASAQRIRHDLQEL
RGRYGTVEPQDKCATCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGMPAYKQARLEELQR
KLGAAPPPTKGSARAKEAEGTAATAGPTREQLKADLDELVAAECVYCGELMIRSIDKPFI
DPQRYKEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggatgagtacgaggactccttgtcccgctcggcggtgttgccgcct
ggctgccccactgtgggcatcccccactcggggtatgtgaatgcccagctcgagaaggaa
gtgcccatcttcacgaagcagcgcattgactttactccttccgagcggattaccagtcta
gtcgtctcctgcaatcaactctgcatgagcctgggcaaggacaccctgctccgcatcgac
ctgggcaaggcgaatgaacccaaccacctggagctgggacgcaaagatgacgccaaagtt
cataagatgttcctggatcctactggctctcatctgctgatcgccctgagcagcacggag
gtcctttatgtgaatcggaatggccagaaggtgcggcccctggcccgctggaaagggcag
ctggtggagagtgtgggctggaacaaggccctgggcaccgagagcagcaccggccccatc
ctagtgggcacctcgcagggccagatcttcgaggccgagctgtccgccagcgaggggggc
ctcttcggccctgcccccgacctctatttccgacccctctacgtgctcagcgaagaaggg
ggcccggcccccgtgtgctccctggaggccgagcgtggccctgaccaccgcctctttgtc
atcgccaccactcgccagcggctcttccagttcatcgggcgcacggcggagaccgccgag
gcccagggcttctcgggcctcttcttggcctacgctgaccacccaccgcccttccgcgag
ttccccagcagcctgggctacagcgagctggccttctacaccccgaaactgcgctcggcg
ccccgggccttcgcctggatgatgggggacggggtgctgtacggtgccctggactgcaca
cgccccgactccctgctgagcgaggagcgggtctgggagtaccccgaaggcatggggccc
caggccagccccccgctggccatcgccctgacccagtttcactttctcctgctgctggcc
gaccgcgtggaggcggtgtgcacgctgaccggccaggtggtgctgcgcgaccactttctg
gacaagttcgggccgctgcggcacctggccaaggacccctccacgggccacctgtgggcc
cacaccgagcgcgccgtgttccgctaccacgtgcagcgggaggcccgggacgtgtggcgc
acctacctggacatgaaccgcttcgacctggccaaggagtactgccgcgagcggcccgac
tgcttggacaccgtcctggcccgcgaggccgacttctgcttcggccagcgccgctacctg
gagagcgcccgctgctacgccctcacccagggctacttcgaggagatcgcgctcaagttc
ctggaggcccggcaggaggaggccctggccgagttcctgcagcacaagctggccggcttg
aagcccaccgagcgcacgcaggccacgctgctcaccacctggctgaccgagctctacctg
agccgcctgggggccctgcaaggggaccccgaggccctgggcctctaccgggacacccgg
gagcgcttccgagccttcctgggcagcccccggcacaaggagtggctcttcgccagccgc
gcctccatccacgagctgctggccagccacggagacgcggagcacatggtgtacttcgcc
gtgatcatgcaggactacgagcgggtggtggcctaccactgccagcacgaggcctacgag
gaggccctggccgtgctggcccgccaccgagacccgcagctcttctacaagttctccccg
atcctcatccgacacatcccccgccagctggtggacgcctggatcgagatgggcggccgg
ctggacgcccggcagctcatccctgccctggtgaactacagccagggcggcgaggcccag
caggtgagccaggccatccgctacatggagttctgcgtgaacgtgctgggcgagacggag
caggccatccacaactacctgctgtcactgtatgcccggggccagccggcctccctgctc
gcctacctggagcaggcgggggccagctcccaccgggtgcactacgacctcaagtacgcc
ctgcggctctgtgccgagcacggccaccatcgagcctgcgtgcatgtctacaaggtcttg
gagctctacgaggaggccgtggatctcgccctgcaggtggacgtggacctggccaagcag
tgtgcagacttgcctgaagaggacgaggagctacggaagaagctgtggctgaagattgca
cggcatgtggtgcaggaagaggaggatgtgcagacggccatggcttgcctggccagctgc
cccctactgaagattgaggacgtcctgcccttcttccctgacttcgtcaccattgaccac
ttcaaggaggccatttgcagctccctgaaagcctacaaccaccacattcaggagctgcaa
caggagatggaggaggccacggccagcgcccagcgtatccggcacgacctgcaggagttg
cggggccgctatggcaccgtggagccccaggacaaatgtgccacctgcgacttccccctg
cttaaccgccctttctacctcttcctctgcggccacatgttccatgctgactgcctgctg
caggccgtgcggcctggtatgcccgcctataagcaggcccggctggaggagctgcagcgg
aagctaggggcagctccgcctcccaccaagggctctgcccgggccaaggaggccgagggc
acggctgccacggcagggccgacccgggaacagctcaaggctgaccttgatgaactggtg
gctgctgagtgcgtgtactgtggggagctgatgatccgttccatcgacaagcccttcatc
gacccacagcggtacaaggaggagcacctcagctggctgtga
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