Suncus etruscus (white-toothed pygmy shrew): 126020446
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Entry
126020446 CDS
T09902
Symbol
SOX17
Name
(RefSeq) transcription factor SOX-17
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
126020446 (SOX17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
setr03000
]
126020446 (SOX17)
Transcription factors [BR:
setr03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
126020446 (SOX17)
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
126020446
NCBI-ProteinID:
XP_049637876
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Position
10:2037531..2040236
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AA seq
400 aa
AA seq
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MSSPDAGYASDDQSQKRSRSAQPLVMAGLGPCPWAESLSPLQDAKAKGDAGASGGPPAGA
AGRAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFV
EEAERLRVQHMQDHPNYKYRPRRRKQVKRLKRAEGGYHHLHALQEAPGASAPLDALGLPY
PEPGYPAGPPPPMLAPHLGAHYRDCQGLDGYPLPTPDTSPLDGVDPDPAFFGAPLPGDYS
YAPALDYAGPPEAPGGGGALHTRLGTEPGGPGGPGMPGLLAPPSALHMYYGALGSPSGPG
SARGFPPLQPQPQPPPPGPGQPSPPPDSADPSQPPELHGLGEVDRTEFEQYLHFVCKPDL
VGLPYQPHEANAGLPDSQGALSSVVSDASSAVYYCNYPDV
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccccgatgcggggtacgccagtgacgaccagagccagaagcgcagccggagc
gcccagcccctggtgatggccggcctgggcccctgtccctgggcagagtcgctcagcccg
ctgcaggacgccaaggccaagggcgacgcgggggccagcgggggacccccggccggggcc
gcgggccgggccaagggcgagtcccgcatccgcaggcccatgaacgccttcatggtttgg
gccaaggacgagcgcaagcgcctggcccagcagaaccccgatttgcacaacgccgagctg
agcaagatgctgggcaagtcctggaaggcgctgaccctggcggagaagcgtccgttcgtg
gaggaggccgagcggctgcgggtgcagcacatgcaggaccaccccaactacaagtaccga
ccccggcgccgcaagcaggtgaagcggctcaagcgcgcggagggcggctaccaccacctg
cacgcgctccaggaggcccccggcgccagcgcgcccctggacgccctggggctgccctac
ccggagcccggctaccccgcggggcccccgccgcccatgctcgccccgcacctgggcgcg
cactaccgcgactgccagggcctcgacggctacccgctgcccacgcccgacacgtcgccc
ctggacggagtggaccccgacccggccttcttcggggcgcctctccccggggactacagc
tacgcgcccgccttggactacgcgggacccccggaggcgcctggcgggggcggcgccttg
cacacccgcctgggaaccgagcccgggggacccggggggcccgggatgccgggcctgctg
gcccctcccagcgccctgcacatgtactacggggccctggggtccccctcggggcccggc
agtgcccgcggcttccctcctctgcagccgcagccccagccaccgcctccgggccccggg
cagccttcgccaccgccggacagtgccgaccccagccagccccccgagctgcacgggctc
ggggaagtggaccgcaccgagttcgaacagtacctgcacttcgtctgcaagccggatctc
gtgggcttgccctaccagccccacgaagccaacgcggggctccccgacagccagggcgca
ctgtcctccgtggtgtccgacgccagctcagccgtctattactgcaactatcccgatgtt
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