Suncus etruscus (white-toothed pygmy shrew): 126020490
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Entry
126020490 CDS
T09902
Symbol
CACNA1B
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04010
MAPK signaling pathway
setr04020
Calcium signaling pathway
setr04721
Synaptic vesicle cycle
setr04723
Retrograde endocannabinoid signaling
setr04725
Cholinergic synapse
setr04726
Serotonergic synapse
setr04727
GABAergic synapse
setr04728
Dopaminergic synapse
setr04930
Type II diabetes mellitus
setr05016
Huntington disease
setr05020
Prion disease
setr05022
Pathways of neurodegeneration - multiple diseases
setr05032
Morphine addiction
setr05033
Nicotine addiction
setr05207
Chemical carcinogenesis - receptor activation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
126020490 (CACNA1B)
04020 Calcium signaling pathway
126020490 (CACNA1B)
09150 Organismal Systems
09156 Nervous system
04727 GABAergic synapse
126020490 (CACNA1B)
04725 Cholinergic synapse
126020490 (CACNA1B)
04728 Dopaminergic synapse
126020490 (CACNA1B)
04726 Serotonergic synapse
126020490 (CACNA1B)
04723 Retrograde endocannabinoid signaling
126020490 (CACNA1B)
04721 Synaptic vesicle cycle
126020490 (CACNA1B)
09160 Human Diseases
09161 Cancer: overview
05207 Chemical carcinogenesis - receptor activation
126020490 (CACNA1B)
09164 Neurodegenerative disease
05016 Huntington disease
126020490 (CACNA1B)
05020 Prion disease
126020490 (CACNA1B)
05022 Pathways of neurodegeneration - multiple diseases
126020490 (CACNA1B)
09165 Substance dependence
05032 Morphine addiction
126020490 (CACNA1B)
05033 Nicotine addiction
126020490 (CACNA1B)
09167 Endocrine and metabolic disease
04930 Type II diabetes mellitus
126020490 (CACNA1B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
setr04040
]
126020490 (CACNA1B)
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
126020490 (CACNA1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
126020490
NCBI-ProteinID:
XP_049637927
LinkDB
All DBs
Position
10:complement(48481251..48640027)
Genome browser
AA seq
2336 aa
AA seq
DB search
MVRFGDELGGRYGGAGGGERARGGGGGGAGGAGGVGPGGLPAGQRVLYKQSIAQRARTMA
LYNPIPVKQNCFTVNRSLFVFSEDNVVRKYAKRITEWPPFEYMILATIIANCIVLALEQH
LPDGDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTG
ILATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMF
AIIGLEFYMGKFHKACFPNSTGPEIIEPVGDFPCGREAPARQCEGDTECREYWRGPNFGI
TNFDNILFAILTVFQCITMEGWTDILYNTNDAAGNMWNWLYFIPLIIIGSFFMLNLVLGV
LSGEFAKERERVENRRAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLD
VLKRAATRKSRNDLIHAEEGEDRFADLSAVGSPFTRASLKSGKTESSSYFRRKEKMFRFF
IRRMVKAQSFYWVVLCVVALNTLCVAMVHYHQPQRLTTALYFAEFVFLGLFLTEMSLKMY
GLGPRCYFRSSFNCFDFGVIVGSIFEVVWAAVKPGTSFGISVLRALRLLRIFKVTKYWNS
LRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFKEETPTTNFDTFPAAIL
TVFQILTGEDWNAVMYHGIESQGGVSKGMFSSFYFIVLTLFGNYTLLNVFLAIAVDNLAN
AQELTKDEEEMEEAANQKLALQKAKEVAEVSPMSAANISIAARQQNSAKARSVWEQRASQ
LRLQNLRASCEALYSEMDPEERLRYATTRHLRPDMKTHLDRPLVVEPGRGPAGCKARPEP
VEPTEPADPPRRHHRHRDKDKTPGPAPVAQDGGASGQGAPKPEGAEPGARDERPRPHRSR
SKEAAGPKEARNERGGRRHHRRGSPEDTAEREPRRHRAHRHAPDATREAKEDTAKAERRA
RHRGPRPNVREPEAGEEPRRHRARHKAQSAHEDPEKEEVDRDAEAEDRDKEKELRNHQPK
EPHCDLEASRVPGLGSVQALPSTCLQKVEEQPETADNQRNVSRMGSQPLDLSTSVYIPAS
LASPAGDTTAAPSGNVDVESQADGKKAAEADDGMRRGPRPIVPHSSMFCLSPTNLLRRFC
HYIVTMRYFEMVILVVIALSSIALAAEDPVQTDSSRNNVLKYMDYIFTGVFTFEMVIKMI
DLGLLLHPGAYFRDLWNILDFIVVSGALVAFAFSSVMGGSKGKDINTIKSLRVLRVLRPL
KTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKELE
RDCRGQYLDYEKEEVEAQPRQWKKYDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATY
EEQGPSPGFRMELSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERAC
IDFAISAKPLTRYMPQNKQSFQYKTWTFVVSPPFEYFIMAMIALNTVVLMMKFYDAPFEY
ELMLKCLNIVFTSMFSMECVLKLIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIANNF
INLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVF
GNIALDDETSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSNRACDKHASASECGS
DFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAAC
GRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMPISNEDMTVHFTSTLMALIRT
ALEIKLAPAGTKQHQCDAELRKEIASVWANLPQKTLDLLVPPHKPDEMTVGKVYAALMIF
DFYKQNKTTRDQSHQAPGGLSQMGPVSLFHPLKATLEQTQPAVLRGARVFLRQKSSASLS
NGGAVQTQESGLKESVSWGTQRTQEVPYETKTPLERGHSTEIPLAQPGKPAVDVQMQSVT
LRGSDAEPHPGLESQGRAASMPRLAAETQPAPDSSPMKRSISTLAPQRSHVTHLCNTPLD
RVPASQPAPHHHHRCHRRRDRKQKSLEKGPSLCAENDGAPSSAVGPGPPPGEGSTGCRRE
RRQERGRSQERRQPSSSSSEKQRFYSCDRFGGREPPQPKPSLSSHPTSPTAGQEPGPPRQ
GCGSVNGSSLLPTSGASTPGRGGRRQLPQTPLTPRPSITYKTANSSPVHFTGAQSSLPAF
SPGRLSRGLSEHNALLQREPLGQPLAPSSRIGSDPYLGQRLDSEATARPQPEDTLTFEEA
MATNSGRSSRTSYVSSLTSQSHPLRRVPNGYHCTLGLSSGGRARHSYHHPDQDHWC
NT seq
7011 nt
NT seq
+upstream
nt +downstream
nt
atggtccgcttcggggacgagctgggcggccgctatgggggcgccggcggcggggagcgg
gcccggggcggcggcggcggcggggccggcggggcgggcggcgtgggccccgggggtctg
ccggccggccagcgggtgctgtacaagcagtcgatcgcgcagcgcgcgcggaccatggcg
ctctacaaccccatcccggtcaagcagaactgcttcaccgtcaaccgctcgctcttcgtc
ttcagcgaggacaacgtcgtccgcaaatacgccaagcgcatcaccgagtggcctccgttc
gagtacatgatcctggccaccatcatcgccaactgcatcgtgctggcgctcgagcagcac
ctgccggacggcgacaagacgcccatgtccgagaggctggatgacacagagccctacttc
atcggcatcttctgctttgaggctggcatcaaaatcatcgcgctgggcttcgtgttccac
aagggctcctacctgcgcaacggctggaacgtcatggacttcgtggtggtgctcacaggg
atcctggccactgcgggcacagacttcgacctgcggactctgcgggctgtgcgcgtgctc
cggcccctgaagctcgtgtctgggattccaagtctgcaggtggtgctcaagtccatcatg
aaggccatggttccactgctacagattggcctgcttctcttcttcgccatccttatgttc
gccatcattggcttggagttctacatgggcaagttccacaaagcctgtttccccaatagc
acaggaccagagatcatagagccagtgggagacttcccctgtggcagggaggcacctgcc
cggcaatgtgagggtgataccgagtgccgtgagtactggcggggacccaactttggcatc
accaacttcgacaacatcctgtttgccatcctgacggtgttccagtgcataaccatggag
ggctggaccgacatcctgtacaatacaaatgatgcagctggaaatatgtggaactggctc
tacttcatccccctcatcatcattggctccttctttatgctcaacctggtgctgggcgta
ttgtcaggagagtttgccaaggagcgtgagagggtggagaaccgaagggccttcctgaag
ctgcgccggcagcagcagatagagcgggagctcaacgggtacctagagtggatcttcaag
gctgaggaagtcatgctggcagaggaggacaaaaacgcggaggagaagtccccactggac
gtgctgaagagggcggccaccaggaagagccgcaatgatctgatccacgcagaggagggc
gaggaccgcttcgcagatctcagtgcagttgggtccccgttcacccgcgccagcctcaag
agtgggaagaccgagagctcatcatacttccgtcgcaaggagaaaatgttccgcttcttc
atccggcgcatggtcaaggcacagagcttctactgggtggtgctgtgcgtcgtggcgctc
aacacactgtgtgtggccatggtgcactaccaccagccccagcggctcaccacagcgcta
tactttgcagagtttgtctttctgggcctcttcctcactgagatgtccctgaagatgtac
ggcctggggccccggtgctacttccgctcgtccttcaactgcttcgactttggggtcatt
gtggggagcatcttcgaagtggtctgggctgctgtcaagccaggcacctcctttgggatc
agtgtgctgcgggctctccggctgctgaggatctttaaggttaccaagtactggaactcc
ctgcggaacctggtggtgtctctgcttaactccatgaagtccatcatcagtcttctcttc
ttgctcttcctgttcatcgtggtcttcgctctgctgggcatgcagctgttcggggggcag
ttcaacttcaaagaagagactcccacaaccaactttgacaccttcccagctgccatcctc
actgtcttccagatcttgacgggagaggactggaacgctgtcatgtaccacgggatcgaa
tcacagggaggcgtcagcaaaggcatgttctcgtccttctacttcatcgtcctgacactg
tttggaaactacactttgctgaatgtcttcctggccatcgctgtggacaacctcgccaat
gctcaggagctaaccaaggatgaagaggagatggaggaagcagccaatcagaagcttgct
ctgcagaaggccaaggaagtggctgaagtcagccccatgtctgcagccaacatctccatc
gctgccaggcagcagaactcggctaaggcacgctcggtgtgggagcagcgggccagccag
ctgcggctgcagaacctgcgtgccagctgcgaggccctctacagcgagatggaccccgag
gaaaggctgcgctacgccaccacgcgccatctgcgccccgacatgaagacgcatctggat
cggccgctggtggtggagccgggccgtgggcctgcggggtgcaaggcccggccggagccc
gtcgagcccacggagcccgctgacccgccgcgcaggcaccacaggcaccgcgacaaggac
aagacccctggcccggccccggttgcgcaggacggcggggcctcgggacagggcgccccg
aaacccgagggcgcagagcccggcgcacgcgatgagcggccgcgcccgcaccgcagccgc
agcaaggaggccgcaggcccgaaggaggcccgcaacgagcgtggtggccggcgtcaccac
aggcgcggctccccggaggacacggccgagcgggagccccgacgccaccgagcgcaccgc
cacgctccagacgcgacccgggaggccaaggaggacacagccaaggccgagcggcgtgca
cgccaccgaggcccgcggcccaatgtccgggagcccgaggctggcgaagaaccgaggcgc
caccgggcccggcacaaggcgcagagcgcacacgaggaccctgaaaaagaggaggtggac
agggacgctgaggccgaggaccgggacaaggagaaggaactgcggaaccaccagcccaag
gagccacactgcgacctggaggccagcagggtgcctggcctggggtctgtgcaggcactg
cccagcacctgtctgcagaaggtggaggaacagcctgagactgcggacaatcagcggaat
gtcagccgcatgggcagccagcccctggacctgagcacctctgtgtacatcccggcatca
ctggccagccctgctggggacaccacggctgcacccagtggcaacgtggacgtggaaagc
caagcagatgggaagaaggcggcagaggctgacgatgggatgaggcgggggccccggccc
attgtcccgcacagctccatgttctgcttaagtcccaccaacttgctccgccgtttctgc
cattacatcgtgaccatgcggtactttgagatggtcattcttgtggtcattgccctgagc
agcattgcgcttgctgctgaggaccccgtgcagacagattcctccaggaacaatgttctg
aagtacatggactacattttcacaggcgtctttacctttgagatggtgataaagatgatt
gacctgggactactgctgcatcctggtgcctatttccgggacctgtggaacattctggac
tttattgtggtcagtggggccctggtggcctttgccttctcgagcgtcatgggaggatcc
aaagggaaagacatcaacaccatcaaatccctgagagtcctacgtgtcttgcggcccctc
aagaccatcaagaggctgcctaagctcaaggccgtgtttgactgtgtggtgaactccctg
aagaatgtcctcaatatcctcatcgtctacatgctcttcatgttcatatttgctgtcatt
gctgtgcagctcttcaaggggaagttcttctattgcactgatgagtccaaggagctggag
agggactgcaggggccagtatctggattatgagaaagaggaggtggaagcccagcccagg
cagtggaagaaatatgacttccactatgacaacgtcctctgggctctgctgacgctcttc
actgtgtccacaggagaaggctggcccatggtgctgaagcactccgtcgatgccacctat
gaggagcagggcccaagccctggcttccgcatggagctctccatcttctatgtcgtctac
ttcgtggtcttccccttcttctttgtcaacatcttcgtggccctgatcatcataaccttc
caggagcagggcgacaaggtgatgtctgagtgcagcctggagaagaacgagagggcttgc
attgactttgccatcagcgccaaacccctgactcggtacatgccccagaacaagcagtcc
ttccagtacaagacgtggacctttgtggtctcaccacccttcgaatacttcatcatggcc
atgatcgctctcaacacggtggtgctgatgatgaagttctacgatgcgccgtttgagtac
gagctcatgctgaagtgcctcaacattgtatttacctccatgttctccatggagtgtgtg
ctgaagctcatcgccttcggggtgttgaactacttccgagatgcatggaatgtctttgac
ttcgtcacggtgttgggaagtataactgatattttagtaacagagattgcgaacaacttc
atcaaccttagcttccttcgcctcttccgggcagcgcggctcatcaagctgctccggcag
ggctacaccatccgcatcctgctgtggacttttgtccagtccttcaaggccctgccctat
gtgtgcctgctcatcgccatgctcttcttcatctatgccatcataggcatgcaggtcttc
ggaaatattgctctggatgatgaaaccagcattaatcggcacaacaacttccggacattt
ctgcaagccttgatgctgctattcaggagtgccactggggaggcctggcacgagatcatg
ctgtcctgtctcagcaaccgggcctgtgataagcatgccagcgccagtgagtgtgggagc
gactttgcctacttttacttcgtctccttcatcttcctttgctcctttctgatgttgaac
ctctttgtggctgtgatcatggacaattttgagtacctcacgcgggactcttccatccta
gggcctcaccacctggacgagttcatccgggtctgggctgagtacgacccggctgcgtgt
gggcgcatcagttacaatgacatgtttgagatgctgaagcacatgtccccgcccctgggg
ctggggaagaagtgccccgcgcgtgtcgcctacaagcgcctggttcgcatgaacatgccc
atctccaatgaggacatgactgtccacttcacgtccacgctgatggccctcattaggact
gcgctggagatcaagctggctccagcgggcacaaagcagcatcagtgtgatgcagagctg
aggaaggagatcgcctctgtgtgggccaatctaccccagaagaccctggacctactggtg
ccacctcacaaaccggatgagatgacagtgggaaaggtctacgcagctctcatgatcttt
gacttctacaaacaaaacaaaaccaccagagaccagagtcaccaggctcctggagggctg
tcccagatgggccctgtgtccctgttccaccctctgaaggcgaccctggagcagacacag
cctgcagtgctccgaggagcccgggttttcctgcgacagaagagctcggcctctctcagc
aatggcggagcagtacagacccaagagagtggcctcaaagaatctgtttcctggggcacc
cagaggacccaggaggtaccctatgagaccaagacacccctggagcgtggccactcgact
gagatccccttggcacagccaggaaagccggctgtggatgtgcagatgcagagcgtgacc
cttcgaggctctgatgcggaacctcatccaggactggaaagccagggccgggcagcatct
atgcctcgcctggccgctgagacgcagccagccccagattccagccccatgaagcggtcc
atctccacactggcgccccagcgatctcacgtgactcacctctgcaacactcccctggac
cgtgttccagcaagccagccagctccccaccaccaccaccgctgccatcgccgcagggac
aggaaacagaagtctctggagaaggggcccagcctgtgtgcagaaaatgatggggcaccc
agcagtgcagtgggtccagggccacctccgggagagggctccacaggctgccggagggag
cgcaggcaggagcgtggccggtcacaagagcgcaggcaaccctcatcatcttcctcggag
aagcaacgcttctattcctgtgatcgttttgggggccgagagcccccacagcccaagcct
tcactcagcagccaccccacgtctcccacagccgggcaggagccaggacctcccagacag
ggttgtggttctgtcaatgggagctctctgttgccaacttctggtgctagcaccccaggc
cgcggtgggaggagacagcttcctcagacccccttgactccccgtcccagcatcacctac
aagacggccaactcctcgcctgtccacttcacgggggctcagagcagccttccggccttc
tctcctggccggctcagccgcggcctttctgaacacaatgccctgctccagagagagccc
ctcggccagcccctggcacccagctctcggattggctccgacccttacctggggcagcgt
ttggacagtgaagcaactgcccgcccccagcctgaggacactctcacctttgaggaggcc
atggccactaactcaggccgctcctctcggacttcctacgtgtcttcccttacctcgcag
tcccaccctctccgccgcgtgcccaacggttaccactgcaccctgggactcagctcgggt
gggcgggcgcgacacagttaccaccaccctgaccaagaccactggtgctag
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integrated database retrieval system
