KEGG   Suncus etruscus (white-toothed pygmy shrew): 126020805
Entry
126020805         CDS       T09902                                 
Symbol
GRIN1
Name
(RefSeq) LOW QUALITY PROTEIN: glutamate receptor ionotropic, NMDA 1
  KO
K05208  glutamate receptor ionotropic, NMDA 1
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04014  Ras signaling pathway
setr04015  Rap1 signaling pathway
setr04020  Calcium signaling pathway
setr04024  cAMP signaling pathway
setr04080  Neuroactive ligand-receptor interaction
setr04082  Neuroactive ligand signaling
setr04713  Circadian entrainment
setr04720  Long-term potentiation
setr04724  Glutamatergic synapse
setr05010  Alzheimer disease
setr05014  Amyotrophic lateral sclerosis
setr05016  Huntington disease
setr05017  Spinocerebellar ataxia
setr05020  Prion disease
setr05022  Pathways of neurodegeneration - multiple diseases
setr05030  Cocaine addiction
setr05031  Amphetamine addiction
setr05033  Nicotine addiction
setr05034  Alcoholism
Brite
KEGG Orthology (KO) [BR:setr00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04014 Ras signaling pathway
    126020805 (GRIN1)
   04015 Rap1 signaling pathway
    126020805 (GRIN1)
   04020 Calcium signaling pathway
    126020805 (GRIN1)
   04024 cAMP signaling pathway
    126020805 (GRIN1)
  09133 Signaling molecules and interaction
   04080 Neuroactive ligand-receptor interaction
    126020805 (GRIN1)
   04082 Neuroactive ligand signaling
    126020805 (GRIN1)
 09150 Organismal Systems
  09156 Nervous system
   04724 Glutamatergic synapse
    126020805 (GRIN1)
   04720 Long-term potentiation
    126020805 (GRIN1)
  09159 Environmental adaptation
   04713 Circadian entrainment
    126020805 (GRIN1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    126020805 (GRIN1)
   05014 Amyotrophic lateral sclerosis
    126020805 (GRIN1)
   05016 Huntington disease
    126020805 (GRIN1)
   05017 Spinocerebellar ataxia
    126020805 (GRIN1)
   05020 Prion disease
    126020805 (GRIN1)
   05022 Pathways of neurodegeneration - multiple diseases
    126020805 (GRIN1)
  09165 Substance dependence
   05030 Cocaine addiction
    126020805 (GRIN1)
   05031 Amphetamine addiction
    126020805 (GRIN1)
   05033 Nicotine addiction
    126020805 (GRIN1)
   05034 Alcoholism
    126020805 (GRIN1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04040 Ion channels [BR:setr04040]
    126020805 (GRIN1)
Ion channels [BR:setr04040]
 Ligand-gated channels
  Glutamate (ionotropic)
   126020805 (GRIN1)
SSDB
Motif
Pfam: Lig_chan ANF_receptor Lig_chan-Glu_bd SBP_bac_3 Ion_trans_2 DUF6724
Other DBs
NCBI-GeneID: 126020805
NCBI-ProteinID: XP_049638355
LinkDB
Position
10:complement(48926878..48956982)
AA seq 907 aa
MSAMHLLTLALLLSCSFARASCDPKIVNIGAVLSTRKHEQMFREAVNQANKRHGSWKLQL
NATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPNDHFTPTPVSYTAGFYRIPVLG
LTTRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYSWNHIILLVSDDHEGRAAQKRL
ETLLEERESKSKKRNYENLDQLSYDHKRGPKAEKVLQFDPGTKNVTALLMEARELEARVI
ILSASEDDAATVYRAAAMLNMTGSGYVWLVGEREISGNALRYAPDGIIGLQLINGKNESA
HISDAVGVVAQAVHELLEKENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYSEGVTGRVE
FNEDGDRKFSNYSIMNLQNRKLVQVGIYNGTHVIPNDRKIIWPPGGETEKPRGYQMSTRL
KIVTIHQEPFVYVKPTMSDGTCKEEFTVNGDPVKKVICTGPNDTSPGSPRHTVPQCCYGF
CIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLT
INNERAQYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLY
LLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAG
FAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVE
LSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGF
GIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFM
LVAGGIVAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQQYHPTDITGPLNLSD
PSVSTVV
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgagcgccatgcatctgctgaccctcgccctgcttctttcctgctccttcgcgcgagcc
tcctgcgaccccaagatcgtcaacatcggcgcggtgctcagcactcgcaagcacgagcag
atgttccgcgaggcagtgaaccaggccaacaaacgccacggctcctggaagctgcagctc
aacgccacgtccgtcacgcacaagcccaacgccatccaaatggccctgtcggtgtgcgag
gacctcatctccagccaggtctatgccatcctggttagccaccccccaacgcccaacgac
cacttcacccccacccccgtctcctacacggctggcttctaccgcatccctgtgctggga
ctgaccacgcgcatgtccatctactcggataagagcatccacctgagcttcctgcgcacg
gtgccgccctactcgcaccagtcgagcgtgtggttcgagatgatgcgcgtgtacagctgg
aaccacatcatcctgctggtgagcgacgaccacgagggccgcgcggcccagaagcgcctg
gagacgctgctggaggagcgcgagtccaagagtaaaaaaaggaactatgaaaacctcgac
caactgtcctatgaccacaagcgcggacccaaggccgagaaggtgctgcagtttgacccg
gggaccaagaacgtgacagctttgctcatggaggcgagagagctggaagcccgtgtcatt
atcctctcagccagcgaggacgatgcagccaccgtgtaccgagcggccgcgatgctgaac
atgacgggctccggctacgtgtggctggtcggggagcgcgagatctcggggaacgccctg
cgctacgccccggacggcatcatcgggctgcagctcatcaacggcaagaacgagtcggcg
cacatcagcgacgcggtgggcgtggtggcgcaggcggtgcacgagctgctggagaaggag
aacatcaccgacccgccgcggggctgcgtgggcaacaccaacatctggaagacggggccg
cttttcaagagggtgctgatgtcctccaagtactcagagggcgtgactggccgcgtggag
ttcaatgaagacggggaccgaaagttctccaactacagcatcatgaacctgcagaaccgc
aagctggtgcaagtgggcatatacaacggcacccatgtcatccccaacgacaggaagatc
atctggccaccaggaggggagacggagaagccccgagggtaccagatgtccactaggcta
aagatagtgacgatccaccaagagcccttcgtgtatgtcaagcccacaatgagcgatgga
acatgcaaggaagaattcacagtcaatggcgatccggtcaagaaggtcatttgcacaggg
cccaatgacacctctcctggcagcccacgacacacggtgcctcagtgctgctatgggttc
tgcatcgacctgcttatcaagctggcgcggactatgaacttcacctacgaggtgcacctt
gtggccgacggcaagttcggcacacaggagcgggtgaacaatagcaacaagaaggagtgg
aacgggatgatgggcgagctcctcagcggccaggcagacatgattgtggctccactgacc
atcaacaatgagcgcgcacagtacatcgagttctccaagcccttcaagtaccagggcctg
accattctggtcaagaaggaaattccccgtagcacactggactcgttcatgcagcctttc
cagagcactctgtggctgctggtgggactgtcggtgcatgtagtggctgtgatgctctat
ctcctggaccgcttcagtccctttggccggttcaaagtgaacagcgaggaggaggaagaa
gatgcacttaccctatcctcggccatgtggttctcctggggcgtccttctgaactccggc
atcggagaaggtgccccccggagcttctctgcccgtatcctgggaatggtgtgggccggc
tttgccatgatcatcgtggcctcctacactgccaacctggcagccttcctggtgttggac
cggccggaggagcgcatcacaggcatcaatgacccccggttgagaaacccctctgacaag
ttcatctacgccacagtgaagcagagctctgtggacatttacttccggcggcaggtggag
ctgagcaccatgtaccggcacatggaaaagcacaactatgagagcgcggctgaggccatc
caggctgtgcgggacaacaagctgcacgccttcatctgggactctgctgtgctggagttt
gaggcctcgcagaagtgtgacctggtcaccacgggcgagctattcttccgctccggcttc
ggcattggcatgcgcaaggacagtccctggaagcagaacgtctccctgtccatcctcaag
tcccacgagaatggcttcatggaagacctggacaagacatgggttcggtaccaggagtgc
gactcgcgcagcaatgcccctgcgactctcacctttgagaatatggcaggggtcttcatg
ctggtggccgggggcatcgtggccggcattttcctcatcttcatcgagattgcctacaag
cggcacaaggatgcccgccggaagcagatgcagctggccttcgctgcagtgaacgtgtgg
aggaagaacctgcagcagtaccatcccactgatatcacgggcccgctcaacctctcagat
ccctcggtcagcaccgtggtgtga

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