Suncus etruscus (white-toothed pygmy shrew): 126020829
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Entry
126020829 CDS
T09902
Symbol
RP1
Name
(RefSeq) oxygen-regulated protein 1
KO
K19538
retinitis pigmentosa 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
setr03037
]
126020829 (RP1)
04812 Cytoskeleton proteins [BR:
setr04812
]
126020829 (RP1)
Cilium and associated proteins [BR:
setr03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
126020829 (RP1)
Cytoskeleton proteins [BR:
setr04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule-associated proteins (MAPs)
126020829 (RP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PLAT
DCX
FGF
DCX2_DCDC1
Motif
Other DBs
NCBI-GeneID:
126020829
NCBI-ProteinID:
XP_049638364
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All DBs
Position
10:2168912..2418379
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AA seq
1380 aa
AA seq
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MSDAPDRNSSMIHLSSDDQVLSPRHPGVPQPVVAKRINFYKSGDPQFGGVSVVVNPRSFK
TFDALLDNLSRKVPLPFGVRNISTPRGRHSITRLEELVDGESYLCSHGRKVQPVDLTQAS
RRPRPWHSSRALSVPQGSGPAAPAQGLPRLRRLLIFRNGDPKTRKTVLLSKRVTRTFETF
LQHLTEVMRYPVIKLYATDGRKIPSLQAVLLSSGAVVAAGKGPFKPGNYDIQKYMLPPRS
LGISSRVFPKGRVRPEKKSGRWRVTIITSDFPDAGTTSQIYIVLYGQHRSSTPIYLYGTD
GAQFQNGHKDVFTITVGDIGTLFKIRIGHTNSGLSPSWHCKEIYLCDKNSEKEFHIPVER
WLARDQEDGDICREFPIFNKEEPVLPVTVYDVHVTTGELWNAGIEANVYISIFGDKGDSG
SRQLFKSKSSFNFLRGQTDIFSLESVYLGNLYKIVIGHDGLGPGNGWFLDDVVVIDPTTN
REYTFFCHRWLDQGEDDGKIVRELYARDNRIIYAQQKLEVNRKETWAAESWKFTKGNTLQ
FYNRLTEGFVRLYPDGTVDAAGEKTDKYGLFDVIFNKGNTCIFQSHEIRHLSLALDNGSV
TGMASGGPSTELRVLYQPNRCALLESALDPGQTVIFDRLGKMADGSSVGYADLSKEFVVF
VKGIFLNSAVVLLATNLCQALCLQSDGSCTGVGNQSEKSYWKVHKVSSGICMFESVKHVR
MYLRIKDGQCDGTGTGEPECHFKIKKNLEDASICLESVMSPGLFVGLQSDGKAKPVIYTK
DGNIFFYPQIIKFGRENPMGMSASSNQEVEKIHQSENQQETAVEMETKELMLSNAKEIRL
SQIRETFLTEDEWKVLVLTGNTGTRANVTLWVYGDEGFDGPINLSKNNPEKLFLAQQEDE
FPVVIRNIGMIYKIRIGHDGSSEQPEWSLQRVILQHVRSKKTLYFEANVYLSRIKAVEDI
VCELPVVKGGQAMFPVVRYHVDVYTGELKQAETLSEVFLCLYGERGDSGLRQLYKSNMPA
KFQRGQKDTFQIEAVSLGKLQKVLLRCDAEDKSQYWYCEKVVVQDPSLTTESIFLCERWL
PFMSQGIIHSEIELYLQEMQINHQPKIQEEANEGDWKVTVVTGDHENAGTTATVFLYVYG
EVGCSGPIILGSGKHQLFNPNTADIFKINLRDVGDIYKIRIGHDNSGKDPRWYLEEIRLE
NIDTNELFDLPVYSWIDENENDGDIWKEMPIGRTHQTPLPVVVYEIYTHTGRKPGAETES
NVFINLIGTRGDSGNRRLHRSKNNQVKFRCGQVDIFSIAAVTLGKLTKALISHDGTGPGN
GWFLESIVVKFEEEDGNQEVLFPCHRWLDEYQDDGKTERELLPENCYNNSTQGEFTSMSP
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgcacctgacaggaactcttccatgattcatctctcttctgatgaccaagtt
ctatcccctcgccatccgggggtcccccaacctgtggtggccaaaaggatcaatttctac
aagagtggggacccacaatttggcggggtcagtgtggtggtcaacccacgttcctttaag
accttcgacgctttgctagacaatttgtccaggaaggtccccctgcctttcggggtgcga
aacatcagcacaccaaggggcagacacagcatcacgcgcctggaggagctggtggatggg
gagtcctacctgtgctcccatggcagaaaggtgcagcccgtggacttgacccaggctagc
cggcgcccaaggccttggcacagcagcagggcactcagcgtaccccaggggtccggccca
gcagctcctgcccagggcctgccacgcctccggaggctcctcatcttcaggaacggggac
ccgaagaccaggaagacagtcctgctcagcaagagggtcaccaggacctttgagaccttt
ctgcagcatctgacagaggtcatgcggtacccggtgatcaagctctacgctacggatgga
aggaagattcctagtctccaggcggtgcttctgagctccggggctgtggtggcagctgga
aaggggccctttaaacctgggaactacgacatccagaagtacatgctccctcccagatcg
ctagggatttcttcccgtgtgtttcccaaggggcgtgttaggcccgaaaaaaagagtggc
cgctggagagttactatcatcactagcgactttccagatgcaggtaccacttcgcagatt
tatattgtgctatatgggcagcatagaagttcaacccccatatatctctatggaacagat
ggagctcagtttcagaatggccacaaagatgtttttactatcacagttggagacattggt
acactctttaagattcgtataggtcataccaattccggactttccccttcctggcactgt
aaagagatatacttgtgtgacaagaattctgaaaaagagtttcatatacctgttgaacga
tggttggcccgtgatcaagaagatggagatatctgtcgggaatttccaattttcaataaa
gaagaacctgtccttccagtgacggtatatgacgtgcatgtgacaaccggtgagctatgg
aatgctggaatagaagcaaatgtttacatctctatctttggagataaaggagattcagga
tccagacaattatttaaatcaaagagctccttcaattttttaagaggccaaactgacatc
ttctccctggaatctgtctaccttgggaatttgtataagattgtcataggtcatgatgga
cttggcccaggaaacggctggtttcttgacgacgtcgtggtcatagatcccaccacaaac
cgtgaatatactttcttctgtcacagatggttggatcaaggggaagatgatggtaaaatt
gtcagagaactatatgctagggacaacaggatcatctatgcacaacaaaagttagaagtt
aatagaaaagaaacatgggctgcagaaagctggaaatttacaaaagggaatacacttcaa
ttctacaacaggcttactgaaggctttgtccgtttatatccagatggcacggttgatgca
gctggagaaaagacagacaaatatggcctctttgatgttattttcaacaaaggaaataca
tgtatttttcaaagtcatgagataaggcacctttcacttgctcttgataatggctctgtc
actggaatggctagtggtgggccttcaacggagctgcgggtactttaccagcccaatcgc
tgtgcactcctggagtcagcactggatcctggccagacagtcatttttgatcgcctgggc
aaaatggctgatggatcctcagtaggttatgcagacctctcgaaagaatttgtggttttt
gtcaagggtatatttctcaacagtgctgtggtgctattggcgaccaacctatgccaggct
ctgtgtcttcagtctgatgggagctgcactggagtgggaaatcaatctgaaaaatcatac
tggaaagtgcataaagtcagctctggaatttgtatgtttgaaagtgtgaaacatgtgcga
atgtacctgaggattaaggatggccagtgtgatggaacaggtacaggagagcctgagtgc
cattttaaaattaagaagaacttggaagatgcatctatatgtctggaatctgtgatgagc
ccaggattgtttgttggacttcaatcagatggaaaggcaaaacccgttatttatactaag
gatgggaacattttcttttatcctcaaataatcaaatttggcagagaaaacccaatgggc
atgtctgcatcctctaaccaagaggtagagaagatccaccaatcagagaaccagcaagaa
acagcagtagaaatggagacgaaggagctcatgctttcaaatgcaaaagaaatcaggctt
tcacaaatcagagagacttttctgacagaagatgaatggaaagtgttggtgctgacagga
aacacagggacccgggccaatgtcaccctctgggtgtatggagatgaaggttttgatgga
ccaatcaatcttagcaagaataaccctgagaagctcttcctcgcacagcaggaggatgaa
tttccggttgtgataagaaacattggaatgatttataagataagaattggacatgatgga
tctagtgaacagcctgagtggagcttacagagggtgattcttcaacatgtgaggagcaag
aagaccctatattttgaggcaaatgtgtacttatctcgaattaaagcagtcgaagacatt
gtttgtgagcttccagttgtcaaaggaggacaagctatgtttccagtagtgagataccat
gttgacgtctatactggggaactcaagcaagcagaaacattgtctgaagtttttctgtgc
ctctatggggagagaggagattctggccttaggcaactgtacaaatcgaacatgcctgca
aaatttcaaagaggacaaaaggatacatttcaaatcgaagcagtgtcactcgggaagctg
cagaaggtgctgttgcgctgtgatgcggaagacaagtcacagtactggtactgtgagaag
gtcgtcgtccaggatcccagcctcacaactgagtccatcttcctctgtgaaagatggctt
ccctttatgtcgcagggaataattcattcagaaattgaactttatcttcaagaaatgcaa
ataaatcatcagcctaaaatacaagaggaagcaaatgaaggtgattggaaagtaactgta
gtcactggagatcatgaaaatgctggtaccacagcaacagtattcctttatgtttatgga
gaagtaggatgctcaggtcccattattttaggatctggaaaacaccagctgtttaacccc
aacaccgcagatattttcaagattaatcttagagatgttggtgatatctataaaatacgc
attggacatgacaacagtgggaaagatcccaggtggtatctggaagaaattagactagaa
aatatagacacaaatgagctgtttgatttacctgtttattcctggatagatgaaaatgaa
aatgatggtgatatatggaaagaaatgcccattggaagaactcatcaaacacctttgcca
gtcgtggtttatgagatctacacgcacactggcaggaaaccaggtgcagagacagaatct
aatgtttttatcaacctcattggcaccagaggagattcggggaatcgaaggcttcatcga
tcaaaaaataatcaagtcaagtttcggtgtggtcaggttgatatattttccattgcagca
gtaactcttggaaaattgacaaaagctctaataagccatgatgggactggtccaggtaat
ggatggtttcttgagagcattgttgttaagtttgaggaagaagatggcaatcaagaggtg
ctatttccctgtcacagatggctagatgagtaccaagatgatggcaagactgagagggag
ctactcccagaaaattgttataataatagtacccaaggagaatttacatctatgtccccc
tga
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