Suncus etruscus (white-toothed pygmy shrew): 126022259
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Entry
126022259 CDS
T09902
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
setr03016
]
126022259 (RTCB)
Enzymes [BR:
setr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
126022259 (RTCB)
Transfer RNA biogenesis [BR:
setr03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
126022259 (RTCB)
Prokaryotic type
tRNA splicing ligases
126022259 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
126022259
NCBI-ProteinID:
XP_049639078
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All DBs
Position
11:39777435..39793924
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AA seq
505 aa
AA seq
DB search
MSRNYNDELQFLEKINKNCWRIKKGFVPNMQVEGVFYVNDSLEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPQAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARISS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcggaactataacgatgagctgcagttcttggaaaagatcaataagaactgctgg
cgaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttttatgtaaatgat
tctctggaaaaattaatgtttgaggaattaaggaatgcttgccgaggtggtggtgttggt
ggcttcctgcctgctatgaaacaaataggcaacgtagcagccctgcctgggattgttcat
agatctattgggcttcctgatgtccattcaggttatgggtttgctattggcaatatggca
gcctttgatatgaatgaccctcaagcagttgtatccccaggtggtgtcgggtttgatatc
aactgtggtgtccgcttgctgagaaccaatttagatgagggtgatgttcagcctgtgaag
gagcaacttgcccaggcaatgtttgatcatattcctgttggcgtgggatccaaaggtgtc
atcccaatgaatgccaaagacttggaggaagccttagaaatgggtgtagattggtcccta
agagaaggctatgcctgggctgaggacaaagagcactgtgaggagtacgggagaatgctg
caagcagaccccaacaaggtctctgccagagccaagaaaagaggcctgcctcagttgggg
acccttggagcaggcaaccactatgcagaaatccaggttgtagatgaaattttcaatgaa
tatgctgccaaaaaaatggggatcgaccataaggggcaggtgtgtgtgatgatacacagt
ggaagcagaggcctgggccaccaggtagcaacagatgccttagtggctatggaaaaagcc
atgaagagagacaagatcatagtcaatgaccgtcagttggcctgtgcccggatctcctcc
ccagagggtcaggattatctgaagggaatggcagcagccggaaactacgcctgggtcaac
cgttcttctatgaccttcctaacccgccaggctttcgccaaagtcttcaacacaacccct
gatgacttggacctgcatgtgatctatgatgtttctcacaacattgccaaagtggagcag
cacgtggtggacggaaaggagcggacactgttggtgcacaggaaggggtccacccgtgct
ttccctcctcaccatcctctcatcgctgttgattaccaactcacaggacagccagtgctt
attggtggcaccatgggaacctgtagttacgttcttactggcactgagcagggcatgact
gagaccttcggaacaacctgccatggagcgggtcgtgcattgtcccgagcaaaatctcga
cgtaatttagattttcaggatgtcttagataaattggcagatatgggaattgccatccgt
gttgcttcgcccaaactggttatggaagaggctcctgaatcctataagaatgtgacggat
gtggtgaatacctgtcatgatgctgggatcagcaagaaggccattaaactgagaccaatt
gctgtgatcaaaggttag
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