Suncus etruscus (white-toothed pygmy shrew): 126022325
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Entry
126022325 CDS
T09902
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04518
Integrin signaling
setr04974
Protein digestion and absorption
setr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126022325 (COL2A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126022325 (COL2A1)
04518 Integrin signaling
126022325 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126022325 (COL2A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126022325 (COL2A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
126022325 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
126022325 (COL2A1)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126022325 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
126022325
NCBI-ProteinID:
XP_049639151
LinkDB
All DBs
Position
11:108746809..108780202
Genome browser
AA seq
1487 aa
AA seq
DB search
MARLGATQTLVLLTLLVAAVLRCQGQDLQEAGSCVQNGQRYNDKDVWKPEPCQICVCDTG
DILCDDIRCEDVKDCLSFEIPFGECCPVCSTDLSAASGKPGPKGQKGEPGDIKEIVGPKG
PPGPQGPAGEQGPRGDRGEKGDKGVPGPRGRDGEPGTPGNPGLPGPPGPPGRPGLAGTFA
AQMATGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGSPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGAPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGTPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEPGPKGEPGPAGPQG
APGPAGEEGKRGGRGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGIPGEAGAPGLVGPRGERGFPGERGAPGSQGLQGGRG
LPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPG
QDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPG
PVGPPGLTGPAGEPGREGTPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPSG
PTGKQGDRGEAGAQGPMGPAGPAGARGIPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAG
PPGSPGPPGPPGPPGPGIDMSAFAGLSQREKGPDPLQYMRADQAAGNLRQHDAEVDATLK
SLNNQIESIRSPEGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPANVPKKNWWSSKNREKKHIWFGETINGGFHFSYGDGNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYMDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLRDGCTK
HTGKWGKTIIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcctcggggcgacccagacgctggtgctgctgacgctgctcgtggccgcggtc
ctccggtgccagggccaggatctccaggaggctggcagctgcgtgcagaatgggcagagg
tataatgataaggacgtgtggaagcctgagccctgtcaaatctgtgtctgtgacactgga
gatatcctctgcgatgatatacgctgtgaagatgtgaaagactgcctcagttttgagatc
cccttcggagaatgctgccccgtctgctcaactgacctctccgctgccagtggaaaacca
ggaccaaagggacagaaaggagaacctggagatatcaaggaaattgtaggaccgaaagga
cctccaggaccacagggtcctgcaggtgaacaaggacccagaggtgatcgtggtgaaaaa
ggtgacaaaggtgtgcctggtcctcgtggcagagacggagagcctggaacacctggaaac
cctggcctccccggtcctcctggcccccctggccgccctggccttgccggaacttttgct
gcccagatggcgacaggatttgacgagaaggctggtggtgcccagatgggagtaatgcaa
ggacccatgggccccatgggaccccgaggaccaccaggccccgctggctctcctggacct
caaggatttcaaggcaaccctggagaacctggggaacccggtgtctctggtcccatgggc
ccgcgtggtccccccggccctccaggaaaacccggtgatgatggtgaagctggaaagcct
gggaagtctggtgaaagaggccctcccggtcctcagggtgctcgcggcttccctggaact
ccaggccttcccggtgtcaaaggtcacagaggttacccaggcctagatggtgctaaggga
gaagctggtgctccgggtgtgaagggtgagagtggcgcccccggagagaatggttctcca
ggcccgatgggtcctcgcggcctgcctggtgagagaggacggactggccctgccggggct
gcgggtgcacggggcaatgacggccagcctggccccgcagggcctccgggtcctgtgggt
cctgccggaggtcctggttttcctggtgcccctggtgccaagggagaagctggtcccact
ggtgctcgtggccctgaaggtgctcaaggatctcgcggcgaacctggcactcctgggtcc
cccggaccggctggggcttctgggaaccctggaacggacggaatccctggagccaaaggc
tcggctggtgctcctggcattgctggtgctcctggctttcccggaccccggggcccaccc
ggcccccaaggtgcaactgggcctctgggccccaaagggcaggcgggtgaacccggaatt
gctggcttcaaaggcgaaccaggccccaagggagagccgggtcctgccggtccccaagga
gccccaggtccagcgggcgaagaaggcaaaagaggcggtcgtggcgagcctggtggtgcc
ggtcccattggcccccctggagagagaggcgctcctggcaaccgtggtttccccggtcag
gatggtctggctggtcccaagggagcccctggagagcgggggcccagcggccttgccggc
cccaagggagctaatggcgaccctggccgacccggagagcctggcctgcctggagcccgg
ggtctcactggccgtcctggtgatgctggtcctcaaggcaaagttggcccttctggggcc
cctggtgaagatggccgccctggacctccaggtcctcagggggcccgagggcagcccggt
gtcatgggatttcctggccccaaaggtgctaatggtgagccgggcaaagctggcgagaag
ggactggctggagctcctggtctgagaggtcttcctggcaaagatggggagacaggtgct
gccggaccccctgggcctgccgggccggctggtgagcgaggcgagcagggcgctccaggg
ccctctgggttccagggacttcctggccctcctggtccccctggtgaaggtggaaaacca
ggtgaccagggcattcccggtgaagctggagctcctggcctcgtggggccccgaggtgaa
cgcgggttcccgggtgaacgaggagctcctggttcccagggtctccaggggggccgcggc
ctcccaggtactcctggcactgatggacccaaaggtgcctctggcccagctggcccccct
ggggctcagggccccccaggactgcagggcatgccgggcgaaaggggagcagctggtatt
gctggacccaagggagacaggggagatgttggcgagaaaggccccgagggagctcccggg
aaagacggtggaagaggtctgactggtcccatcggcccccctggccctgctggtgccaac
ggcgagaagggagaagtcgggcctcccggcccttcaggaacagctggtgcccgaggtgcc
cctggtgaacgtggggagactggaccccctgggcctgctgggttcgccggcccgcccggt
gcagatgggcagccaggagccaagggtgagcagggagaggccggccagaagggtgacgct
ggtgcccccggtcctcaaggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgtggtgctcagggtcctccgggagctaccggattccccgga
gctgctggccgcgtgggacctcctggctctaatggaaaccctggaccacctggtcctcct
ggtccttctggaaaagatggtcccaaaggtgttcgaggggacagtggccctcctggccga
gctggtgaccctggtctgcaaggtcctgccggagcccccggcgagaagggagagcctgga
caagacggtccctcgggtcctgatggtcctccaggtcctcagggtctggctgggcagagg
ggcatcgttggtctgcctggacagcgtggcgagagaggattccccggcttgcctggtcca
tcgggtgagcctggcaagcagggagctccggggtcatctggagaccgtggtccccctggc
cctgtgggccctccaggcctgactggtccagctggtgaacctggacgagagggaacccct
ggtgctgatggcccccctggcagagacggcgcagctggagtgaagggtgatcgtggcgag
actggtgccctgggagcccccggagcccctgggccccccggctctcctggcccctctggc
cccaccggcaaacagggagacagaggagaagcgggggcacaaggtcccatggggcctgca
ggaccggctggagcccggggaatcccaggccctcaaggcccccgaggtgacaaaggagaa
actggagaggctggcgagaggggtctgaagggccaccgtggcttcactggtctgcagggt
ctgcccggcccccctggtccttctggagaccaaggtgcttccggtcctgctggtccttcc
ggcccaagaggtcctcctggccctgttggcccctctggcaaagatggttctaacggcatc
ccaggccctattggacctcctggtccccgtggacgctcaggagaaactggccctgctggt
cctcctggaagtcctggccctcctggccctcctggcccccctggccctggcatcgatatg
tctgcctttgctggcctaagccagagggagaagggccctgaccccctgcagtacatgcgg
gcagaccaggccgctggcaacctgaggcagcatgacgctgaggtggacgccaccctcaag
tccctcaacaaccagattgagagcatccgcagccctgagggctcccgcaagaaccctgct
cgcacctgccaggacctgaaactctgtcacccagaatggaaaagcggtgattactggatt
gaccccaaccagggctgcactctggatgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccagccaatgttcccaagaagaactggtggagcagcaaa
aacagggagaagaagcatatttggtttggagaaaccatcaacggtggcttccacttcagc
tatggcgacggcaacctggctcccaacactgccaatgtccagatgactttcctgcggctg
ctgtccacggagggttcccagaacatcacctaccactgcaagaacagcattgcctacatg
gatgaggccgctggcaacctcaagaaggccctgctcatccagggctccaatgacgtggag
atccgggctgagggcaacagcaggttcacctatactgtcctgagggatggctgcacgaaa
cacaccggtaagtggggcaagactatcatcgagtaccggtctcagaagacatcccgcctc
cccatcattgacattgcacctatggacataggagggcctgagcaggaatttggtgtggac
atagggcctgtctgcttcttgtaa
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integrated database retrieval system
