Suncus etruscus (white-toothed pygmy shrew): 126022847
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Entry
126022847 CDS
T09902
Symbol
CNTN1
Name
(RefSeq) LOW QUALITY PROTEIN: contactin-1
KO
K06759
contactin 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
126022847 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
setr04515
]
126022847 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
setr00537
]
126022847 (CNTN1)
Cell adhesion molecules [BR:
setr04515
]
Immunoglobulin superfamily
Contactins
126022847 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
setr00537
]
Others
126022847 (CNTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
C2-set_2
Interfer-bind
Ig_J_second
NDNF
Motif
Other DBs
NCBI-GeneID:
126022847
NCBI-ProteinID:
XP_049639838
LinkDB
All DBs
Position
11:12044095..12285233
Genome browser
AA seq
1019 aa
AA seq
DB search
MNMWLMVSQFVILLSSALSLSEFSWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESPEG
KVSLNCRARASPFPIYKWRMNNGDVDLTSNRYSMVGGNLVINNPDKQKDAGIYYCLASNR
YGMVRSIEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNXFPI
FITMDKRRFVSQINGNLYIANVEASDKGNYSCFVSSHSITKSVFSKFIPLIPLPERTTKP
YPADIVVQFKDIYTLMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAELSTSGAVLKIFN
IQLEDEGVYECEAENIRGKDKHQARIYVQAYPEWVEHINDTEVDIGSDLYWPCVATGKPI
PTIRWLKNGYPYHKGELRLYDVTFDHAGMYQCIAENIHGAIYANAELKILALAPTFEMNP
MKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDG
GIYMCFAENNRGKANSTGTLFITNPTRIILAPINADITVGENATMQCAASFDPALDLTFV
WSFNGYVIDFTRENIHYQRNYMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLV
VRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPII
EGNMEAAKAVDLIPWMEYEFRVLAINTLGIGEPSIPSSRIKTDGAAPNVAPSDVGGGGGS
NRELTITWAPLSREYHYGNNFGYIVAFKPFDGDEWKKVTVTNPDSGRYVHKDETMRPSSA
FQVKVKAFNNKGDGPYSLTAVINSAQDAPSEAPTEVGTKVLSSSEISVHWEHVIEKIVES
YQIRYWAAHDKEVAAHRVQVTSQEYSARLENLLPDTQYFVEVRACNSAGCGPPSEMLETF
TKKAPPSQPPRIISSIRSGSSYIITWDHVVALSNESTVTGYKVLYRPDGQHDGKLYSTPK
HSIEVPIPRDGQYVVEVRAHSDGGDGVVSQVKISGASTLSKSILGLLLPFLGIIFYLKF
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgtggttgatggtcagtcaatttgtgatactattatcttctgcactatcccta
tcagagttttcatggcatagaagatatggtcatggagtttctgaggaagacaaaggattt
ggaccaatttttgaggaacaacctatcaataccatttatccagaggaatcacctgaagga
aaagtttcattaaactgtagggcacgagccagccctttcccaatttacaaatggagaatg
aataatggtgatgttgatctgacaagtaatcggtatagtatggtaggaggaaaccttgtt
atcaacaaccctgacaaacagaaagatgctggaatatactactgtctagcatcaaataga
tatgggatggttagaagcattgaggccaccctgagctttggatatcttgatcccttccca
cctgaggagcgtcctgaggtcagagtgaaagaaggaaaaggaatggtccttctttgtgat
cccccataccatttcccagatgatcttagctaccgttggcttctaaatngatttcctata
tttattacaatggataaacgaagatttgtgtcccagataaatggcaatctctacatcgca
aatgtagaggcatcagacaaaggcaattattcctgctttgtttccagtcattctattaca
aagagcgtattcagcaaatttatcccactgattccattacctgaaagaacaacaaaacca
taccctgctgatattgtggttcaattcaaggacatatatacattgatgggccaaaatgtg
actttggagtgctttgcccttggaaatcctgtccctgatatccgatggcggaaagtcctg
gaaccaatgccaagcactgctgaactcagcacttctggggctgtcctcaagatcttcaat
attcaactagaagatgaaggggtatatgaatgtgaagctgaaaacattagaggaaaggac
aaacatcaggcaagaatttatgttcaagcatatcctgaatgggtggaacatatcaatgac
acagaagtggatataggcagtgatctctattggccttgtgtggccacaggaaagcccatt
cctacaatccgatggctgaagaatgggtacccgtatcataagggtgaattgagactatat
gatgtgacttttgaccatgctggaatgtaccagtgcatagctgaaaacatacatggagca
atctatgcaaatgcagagttgaagatcttggctttggctccaacttttgaaatgaatcct
atgaagaaaaagattttggctgctaaaggaggaagagttataattgaatgcaaacctaaa
gctgcacctaaaccaaaattttcttggagtaaaggaacagaatggcttgttaatagtagc
agaatactcatttgggaagatggcagtttggaaatcaataacattacaaggaatgatggt
ggaatctatatgtgctttgcagaaaataatagggggaaggctaatagcactgggactctt
tttatcacaaatccgacacgaattatattggccccaattaatgctgatattactgttgga
gaaaatgcaaccatgcaatgcgctgcctcctttgatcctgccctggatctcacatttgtt
tggtccttcaatggttatgtgattgattttacaagagagaatattcattatcagcggaat
tatatgctggatgccaatggggaactgctcattcgaaatgctcagctcaaacatgcaggg
aggtatacatgcactgctcagacaatagtggacaattcttcggcctccgctgaccttgtt
gtgagaggccctcctggtccccctggtggtctaaggatagaagatatcagagccacttct
gtggcccttacttggagccgtggttcggataatcatagccctatatctaaatacactatc
cagacgaagacaattctttcagatgactggaaagatgcaaaaacagatcctccaattatt
gaaggaaacatggaagcagcaaaagcagtggatttaatcccatggatggagtatgaattt
agggtactagcaatcaatacgttgggtataggagaacccagtataccatcaagcagaata
aaaacagatggtgcagcacctaatgttgcaccatcagatgtaggaggagggggtgggagc
aacagagaattgaccataacatgggctcctctgtcaagggaataccactatggcaacaat
tttggctatatcgtggcatttaaaccatttgatggtgacgaatggaagaaagtcacagtt
actaatccagactctgggagatatgtccataaagatgaaactatgcgaccttcttctgca
tttcaagtcaaagttaaagctttcaacaacaaaggagatgggccttacagccttactgca
gtaattaattcggcacaggatgcccccagtgaagccccaacagaagtaggaaccaaagtt
ttatcgtcctctgagatatctgttcactgggaacatgttattgaaaaaatagtggaaagc
tatcagattagatattgggctgcccatgacaaagaagtggctgcgcacagagttcaagtt
accagccaagagtactcagccagactggagaaccttctcccagacactcaatactttgtt
gaagttcgagcttgcaatagtgcagggtgtgggccccccagtgaaatgctcgaaactttc
accaagaaagcacctcccagccagccaccaaggatcatcagttctataagatctggttca
agctacataattacctgggatcatgtggttgcactgtcaaatgaatctactgtaacagga
tataaggttctttatagacctgatggccagcatgatggcaaactgtattcaactcctaaa
cactccatcgaagttccgatccccagggatggtcaatatgttgtagaggttcgtgcacac
agtgatggaggagatggagttgtgtctcaagtcaaaatttcaggtgcatccaccttatca
aaaagtattcttggcttacttctgcctttccttggcatcattttctatctgaaattctga
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