Suncus etruscus (white-toothed pygmy shrew): 126022851
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Entry
126022851 CDS
T09902
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
setr04121
]
126022851 (PDZRN4)
Enzymes [BR:
setr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126022851 (PDZRN4)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
126022851 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
126022851
NCBI-ProteinID:
XP_049639841
LinkDB
All DBs
Position
11:12450389..12619583
Genome browser
AA seq
767 aa
AA seq
DB search
MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKFTHEEAVEAFRNAKEPIVVQVLRRTSLSK
PVYSTSPEVQLMNASTQTDITFEHIMVLAKFRSSTPPVPDFCPYMLSDSCHSLHLMEHEF
YENNEYLSRLPADVDRTEDFEYEEIELCRVNSQEKLGLTVCYRTDDEEDTSIYVSEVEPN
SIAAKDGRIQEGDRILQINGEDVQNREAAVALLSRDESKRIVLLVSRPEIQLTESGLEDE
RNEFLEEMNLDMLEEQHNEALQCPAKEVEQQKEKECKEATIDTATFSPNNQEKDSGTKRT
DERLRNDEISEEKNVAKDPKSTLNSGKELEQSQDPLESVELQCSGEYLDSDYFGHPDEDY
ERIQQLLELKCKIQNCEEYDFYYSSRTINCNQGKNEGVEPEFQLLNDEVRNIEFECKNIM
QAHRLQKVRDKCEKIWTFHDGEFQNYTTSLNIQGGELEDIVEHPEKSDKDSSSAYNTAES
CRSTLLTVDHSPDNSLPRMMNITNKKNLRGNIIAHHSSSGESSNESTFTKGKTIEHGCNS
ESKILGISKLSGQEKMANEQISPYLSPYHSSLDRYANSPAHARHYQSYMQKSVIEFPQSQ
LSLMRICKDSQKCLEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDD
DTISEMKMGRYWSKEERKQHLVCAKEQRRRREFMMRSRLEYVKETPQSGSEGKKEINIIE
LSHKKMMKKRNKKILDNWMTIQELMTHGTKSPDGTGVHNAFLSVTTV
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatttgtgcacttttcagaaaagagaggaacattacaaactgctgtacgaa
gtttcccaggtcaacgggaaggatctctcaaagttcacccatgaggaagcagtggaggct
tttcgaaatgccaaggagcccattgtggtccaggttctaagacgaacatctctcagtaaa
ccagtgtatagcacatctccagaagtgcaactcatgaatgctagcactcagactgacatc
acttttgaacacatcatggtcctggccaaatttaggtcatctacccctcctgtgccagac
ttctgtccatatatgctctcagacagttgccattctcttcatctgatggagcatgaattt
tatgaaaacaatgagtatctttcccgattacctgctgatgtagacagaacagaagatttt
gaatatgaggagatagagttatgtcgtgttaacagtcaagagaagctgggtctaacagtc
tgttacagaacagatgatgaagaagacacaagcatttatgtaagcgaggtagaaccaaac
agcattgctgcaaaagatggccggattcaagaaggagatcgtattttacaaataaatggg
gaggatgtccagaaccgcgaagcagcagtagcactgctgtctagagatgagagcaaaaga
attgtgcttcttgtttcaaggccagagattcagctgactgaaagcgggttggaagatgaa
aggaatgaattcttagaggagatgaatttggatatgttagaagaacaacataatgaagca
ttgcagtgtcctgctaaagaggtagagcagcaaaaagaaaaagaatgcaaagaggccaca
atagacacagcaacattttcacctaacaaccaagagaaagacagtggaactaaacgtaca
gatgaacgcttaagaaatgatgaaatttcagaagagaaaaatgtagctaaggatcccaaa
agcacactcaacagtggaaaagagttggaacagagtcaagaccctctagaaagtgttgaa
cttcagtgttctggtgaatacttagattcagattactttggccaccctgatgaggactat
gaaagaatccagcagctcctggaactcaaatgcaagattcaaaattgtgaagagtatgac
ttttattactcaagcagaacaataaactgtaatcaaggaaaaaatgaaggagtagaacct
gagttccaattacttaatgacgaggtaagaaacattgaatttgaatgtaagaatatcatg
caggctcacagactccagaaagtcagagacaagtgtgaaaagatctggacatttcatgat
ggagagttccaaaattataccaccagcctgaacatacaaggcggagaactagaagacatt
gttgaacacccagaaaaatcagataaagacagttctagtgcttacaacacagctgaaagc
tgcagaagcactctacttactgtggaccattcacctgacaattcacttccaagaatgatg
aacatcactaataagaaaaacctgagaggcaatattatagcccatcattcatcttctggt
gagagcagcaatgagtcaactttcaccaaaggcaaaactattgaacatgggtgcaatagt
gaaagcaaaattttgggaatcagcaagctttctggtcaagagaagatggcgaatgaacaa
atctcaccttacctctcaccataccacagttccttagatagatatgcaaacagcccagct
catgctaggcattaccaaagctatatgcagaaatctgtcattgagttcccgcagagtcag
ctcagtttgatgagaatttgcaaggattctcagaaatgtttagagcccaagatggaatgg
aaggtgaaaattaggagcgatgggacgaggtacataaccaagagaccagtgcgagataga
attctgaaagaacgtgctttaaagatcaaggaagagcggagtggaatgacaacagatgat
gacacaatcagtgaaatgaaaatgggacgctactggagcaaagaagagagaaagcaacac
ttggtttgtgctaaggagcagcgtaggcgcagagagttcatgatgaggagtagattagaa
tatgtcaaggagacccctcagagtggtagtgagggcaaaaaggaaatcaacatcattgaa
ctaagtcacaaaaagatgatgaaaaaaagaaacaaaaaaattttggataattggatgaca
atacaagaactgatgacccatgggaccaaatctcctgatggcacaggtgtccataatgca
tttctgtcagttactactgtgtga
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