Suncus etruscus (white-toothed pygmy shrew): 126022902
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Entry
126022902 CDS
T09902
Symbol
TRPM1
Name
(RefSeq) LOW QUALITY PROTEIN: transient receptor potential cation channel subfamily M member 1
KO
K04976
transient receptor potential cation channel subfamily M member 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
setr04040
]
126022902 (TRPM1)
Ion channels [BR:
setr04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
126022902 (TRPM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSDAT_euk
TRPM_tetra
Ion_trans
LSDAT_prok
Motif
Other DBs
NCBI-GeneID:
126022902
NCBI-ProteinID:
XP_049639871
LinkDB
All DBs
Position
11:1499607..1627484
Genome browser
AA seq
2298 aa
AA seq
DB search
MARGARGARGARGSGRAGLGSGGPRARAAGPGRLLLRRRRLRLRLRLAPSAARPIPTLRA
HGRCGGRGWSPRAPRRGRSGRVGSGRAGDLAAPRRREARRQPSRALWRGVGGPGAGVGGA
GATSGPDVSPPPPPATSWRAPRRLRAAEARGFEARGGGGCARRWGGDPGAGHSGVGARGW
AGRRAGPRCHWRARGRRCQAGPGRANGRGGPGERGGAPGTVTQDAEAGVDAGGAAPRWGA
PGRTVFLGGSRPVWGVRPRCGSPEAGRLERAPLFPRPPRLSGGPGPARAPRGRRVRGAER
GPCGAVPGPGVPSAGLALRSLARGVGVRAAPAGSGNMGSPAPPPAANSAPRPRGTDPTHR
RRGLPLEKLRGAWRALPAPPPRRSALGTLWPGPRRPGDPLFPSPASHWPWGQARGPRLAP
RSERERGPGAAGEGGRLGGARRSLGTKASCPPARGCVRDVSKKSPPSDRALRPHGSLHRQ
GQTLGTEDMLPPQCFAESPPTIPGGWRVAGEVGGAGETGGCSVSWELQGTLSRPLITPNV
GAEKMKAWDSLAQRTRFDPQHPSSPSAKPSREPPWSHAKALNPGLAFEGFPFEPEGGEPR
EKETGGRGSLEVSLGVEEWREESCLQLSPGPGPPWLALPQRCPVCPESLYYSGGHHHTER
ALGFKGQLRPASLLAGLQKFLWHKRASPDVSDASSVCLHNRYHPIGPDKSTVVGPGGSLK
KMNSSFKRGSLRSAASSGSQKSRKAWLEKTFCKRECVFLIPSTKDPNRCCCGQLVLQHFQ
PPPSAAPGRQGESTPAEAAEKWSVSRHTQAFPTDSYGVLEFQASGSCNKALYIRVSCDTT
PDLLLRLMVTEWRLELPKLLISVHGGLRNFDLQPKLKQVFGRGLVKAALTTGAWIFTGGV
STGVIRHVGDALKDHSSKSRGRVCAIGIAPWGMVENKEDLIGKGVTRAYQTMGDPRSSLT
PLSGWHTHFILADSGTRGKYGAEAALRRHLEKHISLQKINTRLGQGVPVVGLVVEGGPNV
VSIVLEYLREEPPVPVVVCDGSGRTSDILSFAHKHCGDQGGLNETLKDQLLVTIQKTFNF
TRTQSHQLLALILECMKKKELITVFRMGSEGQADLEMAILTALLKGTNVSAPDQLSLALA
WNRVDIARNQIFVFRPHWPPLTSLALPVESKVQEKEKLPVARGKGKGKKKGKAKEEAEEE
MDPRKVELLNWVSALEQAMLDALVLDRVDFVKLLIENGVDMHRFLTIPRLEELYNTRLGP
PNTLHLLVRDVKKGNLPPDYHISLIDVGLVLEYLMGGAYRCRYTRKSFRTLYNSLFGPKR
PKALKLLGMEDDETSAKGKKKKNKKXEEEADIEVDDPAVSRFQVPFHELLVWAVLMKRHK
MAVFLWQRGEESLAKALVACKLYKAMAHECSESELVDDISQYLDSKVQTLGQLAVELLDQ
SYRNDEQVAMKLLTYELTNWSNSTCLKLAVAAXHRDFIAHTCSQMLLTDMWMGRLRMRKN
PGLKVILGILLPPTILFLEFRTCDDVSYQTAXGQRRQQRKGVENVVMHTGCGFQRGDEEN
EHKKRKASPIGTKICDFYNAPIVKFWFYTISYLGYLLLFNYVILVRMDSWPCVQEWVVIA
YVLSLALEKIREVLMSEPGKLSQKIKVWLQENWNLTDLVAISMFLVGMVLRLQKQPYMGY
GRVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMVDMLYFVVIMLVVLMSFGVARQA
ILHPNEEPSWKLARNIFYMPYWMIYGEVFADQIDPPCGEKPVRRRGPKAPPPCIPGAWLT
PALMACYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHGRPVLPPPMI
IFSHLYIIITRLSGSFQKKREGERDEQDRGLKLFLSEEELKRLHEFEGQCVQEHFQERED
AEQSSSEERIRVTSERVENMSVRLDEINERASFMKTSLQSADLRLGQLEEWAGRTVGLLE
SLVGGEQVGLLPTRSRASSECDATFLHRQSSLGSADGYSLYRYHFNEEEVSEASPHPVAS
ALGSHVQEDTDLKVPTGHETQRPPHLLASTDTPASEALDSGKNALELNPSSGGVIQQEER
PGEDPQREEAGPSVHLAQAPCGQSQAGLPSLQLSAQAQPVGQAKSAHFSPEETPQVCKTI
KSRSFAHCRGGRKAVGVGKVRSGSVLDRAQPAAPEQRAPEWTCQVQKVTRSRSTEILGSQ
VATAPHVPHLCPAGKGNLLSVSSDQSLHLSEPRSRSLHGHPRKAHNNFPRGLGGSGHMGH
ARNLAPVSGLAPEERKVP
NT seq
6897 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggggcgcgcggggcgcacggggcgctcggggctcggggcgcgcggggctcggc
tccgggggacctcgcgcgcgcgctgcggggccgggccggctcctcctccgccgccgccgc
ctccgccttcgccttcgcctggcgccctcagccgcgcggccgatccccactctccgagcg
catgggaggtgcgggggccggggttggtccccgcgcgcgcctcgccggggccgatcgggc
cgggtcgggtcagggcgggccggcgacctggcagccccgcggcgacgtgaggctcggcgg
cagcctagccgcgcattgtggcgcggggtgggcggcccgggcgcgggcgtgggcggggcc
ggggccacatctggccccgacgtcagcccccccccacccccggccacatcctggcgcgcc
ccgcgcaggttacgggcggcggaggcgcgggggttcgaggcccggggagggggcggctgc
gcgcgccgatggggcggggacccgggcgccgggcactccggagtgggcgcgcgcgggtgg
gcagggcggcgggccgggccccggtgccattggcgcgcgcgcgggaggcggtgccaggcc
gggcccgggcgcgccaatgggcgaggcggccccggagagcgcggcggggcgccgggcacc
gtgacgcaggacgccgaggcgggcgtggacgcgggtggggcggccccgcgctggggggcc
ccgggccgcacggtgttcctcgggggctctcggcccgtctggggcgtgcgcccccggtgc
gggagcccggaggcggggcggctggagcgagcccctttgtttccacggcccccacgactt
tcggggggccccggccctgcgcgagccccgcgagggaggcgtgtccgcggggcggagcga
ggtccctgcggggcggtgcccgggccgggggtcccgagtgccggcctcgccctgcgctcg
ctcgctcgcggggttggagtacgtgccgcgccggccggctccgggaacatggggtccccg
gctcccccgcccgctgccaactccgccccgcgcccccggggcacagaccccacccaccgg
cgccggggcctcccgctggagaagctccgcggcgcgtggcgcgcgctccccgcgcccccg
cctcggcgctcggctctcgggacgctttggcccgggccccgccgccccggggaccccctc
tttccgagccccgcatcccactggccatgggggcaagcgcggggcccgcgcctggctccg
cgctcggagagagagaggggccctggggcggcgggggagggagggaggctgggcggggcg
cgtcggtcccttggcaccaaggcgtcctgcccacctgccagaggttgtgtgcgagacgtt
tccaagaagtcgcccccgtctgacagggcgctgaggccacatggctccctccataggcaa
gggcagacattagggacagaggacatgctcccccctcagtgctttgctgagtcgcccccc
accatcccgggtggctggcgggtggcaggtgaagtgggcggagcaggagagacaggtggg
tgcagtgtcagctgggaactccaggggaccttgtcccggcctctgatcacccccaacgtg
ggggcagagaagatgaaagcctgggacagtctggctcagcggactagatttgacccccag
caccccagcagcccatccgccaagcccagccgggagcccccgtggagccatgccaaggcc
ctgaaccctggccttgcctttgaggggttccccttcgagccagaaggaggtgagcctcga
gaaaaggagacaggggggcgaggaagcctcgaggtgtcccttggtgtggaggaatggcgc
gaagaaagctgtttgcagctgagcccaggccccggcccaccctggctggcactgccccag
cgctgccccgtgtgccccgaatctctctattacagcggagggcaccaccacactgagagg
gctcttgggttcaagggccagctcaggcctgcatccctgctggcgggactccagaagttc
ctgtggcacaagagggcaagccccgatgtgtcggacgcttcaagtgtctgcttgcacaat
cgctaccatcccatcggcccagacaagtccacagtggttgggcctggggggtctctgaag
aagatgaacagctccttcaagcggggctcgctccggagtgctgcctcctcggggtctcag
aagagtcggaaagcctggctagaaaaaaccttctgtaaacgggaatgtgtcttcttgatc
cccagcacgaaagaccccaacaggtgctgctgcggccagctggtcctccagcacttccag
cccccgcccagtgctgccccgggcaggcagggggagagcaccccggctgaggcggctgag
aagtggagtgtgagcagacacacacaggccttccccacggactcctacggggtgctcgag
ttccaggccagtggctcctgcaacaaagccctgtatatccgtgtgtcctgcgacacgacg
cccgacctgctgctccgcctcatggtgacagaatggcgcctggagctcccaaagctgctc
atctccgtgcacggtggcctccggaacttcgacctgcagcccaagctgaagcaggtgttt
gggcgaggcctggtgaaggccgccctgaccacgggggcctggatcttcacggggggcgtc
agcacaggggtgatccgccacgtgggagacgccttgaaggaccattcctccaagtcccga
ggccgcgtctgtgccatcgggatcgccccgtggggcatggtggagaacaaggaggatctg
atcggaaagggggtgacccgagcataccagaccatgggcgaccctcggagctcgctgaca
ccactcagcggctggcacacgcacttcatcctggcagacagtggcactcggggcaagtat
ggggccgaggctgcgctgcgtcggcatttggagaagcacatttcactgcagaagattaac
acccgactgggccagggggtgcccgtggtgggcctggtggtggaagggggccccaacgtg
gtgtccattgtgttggaatatctccgggaagagcctccggtccccgtggtggtctgcgac
ggcagcggccgcacctcggacattctgtccttcgcgcacaagcactgtggagaccaaggg
ggactaaacgaaaccctcaaggaccagcttctcgtgaccatccagaaaacatttaatttc
acccggacacagtcacatcagctgttggccctcatcctggagtgcatgaagaagaaagaa
ctgatcaccgtcttcaggatgggctccgagggccaggctgacttggagatggccattctc
acagcactactcaaggggacaaacgtgtctgctccagaccagctgagcctggcgctggct
tggaacagggtcgacattgcacggaaccagatcttcgtcttcaggccccactggccgccc
ctgacctctctggcactgcctgtggagagcaaagtccaggagaaagagaagcttcccgtg
gcccgaggcaaagggaagggcaagaagaagggaaaagcgaaggaggaggcagaggaggag
atggatccacggaaggtggagctactgaactgggtgagcgccctggagcaagccatgctg
gacgccctcgtgctggaccgcgtggacttcgtgaagctcctgatcgagaacggggtcgac
atgcaccgcttcctcaccatcccccggctggaggagctctacaacacgagactgggaccg
ccaaacactctccacttgctggtgagggatgtcaagaagggcaacctgccccccgactac
cacatcagcctcatcgacgtggggctagtgctcgaatacctcatggggggcgcctaccgc
tgccgctacacacgcaagagcttccggaccctctacaacagcctgtttgggcccaagagg
cctaaggcgctcaaacttctgggcatggaagacgatgagacctccgccaaagggaagaag
aagaaaaataagaagnnggaggaagaggcggacatcgaagtggacgacccggccgtgagc
cggttccaggtaccgttccatgagttgctggtctgggccgtgctgatgaagcgccataag
atggctgtcttcctttggcagcgtggcgaggagagcttggccaaggccctggtggcctgc
aagctctacaaggccatggcccacgagtgttcagagagcgagctggtggacgacatctcc
cagtacctggacagcaaagtccaaactttggggcagctggccgtggagctgctggaccaa
tcctacaggaacgacgagcaggtggccatgaagctgctgacctacgagctcacgaactgg
agcaactcaacgtgcctcaagctggctgtggccgccnagcaccgggacttcatcgcgcac
acctgcagccagatgttgctcaccgatatgtggatggggcggctgcggatgaggaagaac
ccgggcctgaaggtaatcctgggcatccttctgccccccaccatcttgttcttggaattc
cgaacctgtgacgatgtctcgtaccaaacagcctaaggacaacgaagacaacaaagaaaa
ggagtggagaatgtggtcatgcataccggatgtgggttccagaggggggacgaggagaat
gagcacaaaaagcggaaggcgtcccccatcgggacaaagatctgtgacttctataatgct
cccatagtcaagttctggttttatacgatctcctatcttggctacctgctgctcttcaac
tatgtcattctggtgcgcatggacagctggccttgtgtccaggagtgggtcgtcattgcc
tatgtcttgagcctggccttggagaagatccgagaggtcctgatgtctgaaccaggcaaa
ctcagccagaagatcaaagtgtggctgcaggagaactggaatctcacagacctcgtggcc
atctccatgttcctggtggggatggtcctgcgcctgcagaagcagccgtacatgggctat
ggccgtgtgatctactgcgtggacatcatcttctggtacatccgggtcctggacatcttc
ggagtcaacaagtacctgggcccctacgtgatgatgattggaaagatgatggtcgacatg
ctctactttgtggtcatcatgctggtcgtgctgatgagttttggggtggcccggcaggcc
atccttcaccccaatgaagagccttcatggaaactggcccggaacatcttctacatgcca
tactggatgatttacggcgaggtgtttgccgaccagatagaccctccgtgcggagagaaa
cctgttcgacgaagagggccaaaggctcccccaccctgcatcccgggcgcctggctcacc
ccggccctcatggcctgttacctgctggtggccaacatcctgcttgtcaacctgctcatt
gccgtcttcaacaataccttcttcgaggtcaagtccatctccaaccaagtgtggaaattc
cagcgctatcagctgatcatgaccttccacggacggccagtccttccgccgcccatgatc
atttttagccacctctacatcatcatcacccgcctcagcggaagcttccagaagaagagg
gagggggagcgggatgaacaagaccgtggcttgaagctcttcctcagcgaagaggagctg
aagaggctgcacgagttcgagggccagtgtgtgcaggagcacttccaggagagggaggac
gcagagcagtcctccagcgaagagcgcatccgggtcaccagtgagagagttgaaaacatg
tcagtgagattggacgagatcaatgaacgggcgagtttcatgaaaacttccctgcagagc
gcggacctcaggctgggccagctggaggagtgggcgggccgcactgtgggcctgctggaa
agcctggtggggggcgagcaggtcggcctgctgcccacacgctcccgggcatcttccgag
tgtgatgcgactttcctgcaccgccagagcagtctgggcagtgccgacggctacagcctg
taccggtaccatttcaatgaagaagaggtgagtgaggccagtcctcaccctgtggcctct
gccctgggctcccatgtgcaagaagacacggacctgaaggtgcccacgggccacgagacg
cagaggcccccacacctcctggccagcaccgacaccccagcctcagaagccttggactct
ggcaagaatgctctggagctcaatcctagttctggaggtgtcatccaacaggaggaaagg
cccggggaagacccccaaagagaagaagcaggcccgagtgtccatctagcccaggccccc
tgtggacaaagccaagcgggtctcccaagcctgcagctcagtgctcaggcccaacctgtg
ggccaggcaaaatcggctcatttctccccagaggaaacacctcaagtctgcaaaaccatc
aagtcccggagctttgcgcactgccggggaggaagaaaggcagtgggtgtggggaaagtg
aggtctggctctgtcctggaccgggcacagccggctgcacccgagcagcgggctcccgag
tggacgtgccaagtgcagaaggtgacacgttctcgcagcacggagatcttggggtcccaa
gtggccactgctccccacgtcccccatctctgcccagccgggaaaggaaacctgctgtcc
gtgagctctgaccagtctctgcatctctctgagccccggtccaggagtctccacgggcac
cccaggaaggcgcataataactttccacgagggttaggaggctccgggcacatgggccat
gcaaggaacctggcaccagtgtctggactcgccccagaggaacggaaagttccctag
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integrated database retrieval system
