Suncus etruscus (white-toothed pygmy shrew): 126022961
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Entry
126022961 CDS
T09902
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03082
ATP-dependent chromatin remodeling
setr04714
Thermogenesis
setr05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
126022961 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
126022961 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
126022961 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126022961 (SMARCC2)
03036 Chromosome and associated proteins [BR:
setr03036
]
126022961 (SMARCC2)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
126022961 (SMARCC2)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
126022961 (SMARCC2)
PBAF complex
126022961 (SMARCC2)
GBAF(ncBAF) complex
126022961 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
126022961
NCBI-ProteinID:
XP_049639932
LinkDB
All DBs
Position
11:complement(84803726..84832239)
Genome browser
AA seq
1235 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLARPNIFLCPDIEPKLLGKLKDIIKRHQGTVTEDKNNASHVVYP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVNDDKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQEDESMETTGKDEDENSTGNKGEQTKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKTPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQTSASQQMLNFPDKGKEKP
TDMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTTSDEPE
RIEESGTDETRTEGQATEEKKEPKEPREGVGTVEEETKEKTSETPKKDEEKGKEADSEKE
SEKSDGDPTVDPEKEKEPKEGQEEVLKEVVESEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPPVLPPGSQPILPAGATGPPTVHGLAMA
QASVAPAPAGSGAPPGSLGPSEQIGQAGPTAVPQQQQPVGAPQPGAVPPGVPPPGPHGPS
PFPNQQTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPPPAPSIIPFGSLADSISINL
PPPPNLHGHHHHLPFAPGTLPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQS
PAIVAAVQGNLLPSASPLPGEKGPGGEKGEGKGST
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggcggcggacacc
gtgacccagttcgacaacgtgcggctgtggctcggcaagaactacaagaagtatatacaa
gctgaaccacccaccaacaagtccctgtctagcctggttgtacagttgctacaatttcag
gaagaagtttttggcaagcatgtcagcaatgcaccactcactaaattgccgatcaaatgt
ttcctagattttaaagcaggaggttctctttgccatatacttgcagctgcctacaaattc
aagagtgaccagggatggcggcgttacgatttccaaaatccgtcccgcatggaccgcaat
gtggaaatgttcatgaccatcgaaaagtctttggtgcagaataattgcctagctcggcct
aacatttttctgtgcccagatattgaacccaaactcctagggaaattaaaggacattatc
aagagacatcagggaacggtcacggaggataagaacaacgcttcccatgtagtgtatcct
gtccctgggaaccttgaagaagaggaatgggtccgaccagtaatgaagagggataagcag
gttcttctgcactggggctactatcctgacagttatgacacctggatcccagccagtgaa
attgaagcttctgtggaagatgctccaactcctgagaaacctaggaaggttcatgccaag
tggatccttgatacagatactttcaatgaatggatgaatgaggaagactacgaagtaaat
gatgacaaaagccctgtttcccgccgcaagaagatttcagcaaagactctgacagatgag
gtgaacagcccagactctgatcgacgggacaagaaaggggggaactataagaagaggaaa
cgctctccttctccttcaccaaccccggaagcgaaaaagaagaatgctaaaaaaggtccc
tcaacaccttacaccaagtcaaagcgtggccacagagaagaggaacaggaagacttaact
aaggacatggatgaaccctcaccagtccccaacgtagaagaggtgacattacccaaaaca
gtcaacactaagaaggactcagaatctgcccctgtcaagggaggcactatgactgacctg
gatgaacaggaagacgaaagcatggagaccacgggcaaggatgaggatgaaaacagtacc
gggaacaagggggagcagaccaagaacccggacctgcacgaggacaatgtgaccgaacag
actcaccacatcatcatccccagctacgctgcctggtttgactataacagtgttcatgcc
atcgagaggagagctctccctgagttcttcaacggcaagaacaagtccaagactccagaa
atctatctggcctaccgaaacttcatgattgacacttatcggctgaacccacaggagtat
cttacatccactgcctgccgcaggaacctggcgggtgatgtctgtgccatcatgagggtt
catgccttcctagaacagtggggtcttattaactatcaggtggatgcagagagtcgaccg
acccccatggggcctccacccacctctcacttccacgtcttggcggacacaccatcaggg
ctggtgcctctgcagcccaagaccccgcagggccgccaggttgatgctgataccaaggct
gggcgaaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagacctctgcttctcagcaaatgctcaacttccccgacaaaggcaaagagaaaccg
acagacatgcagaacttcgggctgcgtaccgacatgtacacgaagaagaatgtcccctcc
aagagcaaagctgcggccagtgccacccgagagtggaccgagcaggagacgctgctcctt
ctggaggccctggaaatgtacaaagacgactggaacaaggtgtccgagcacgtgggcagc
cgcacgcaggacgagtgcatcttgcattttctacgccttccaattgaagacccataccta
gaggactcagaggcctccttgggccccctggcctaccagcccatccccttcagtcagtcg
ggcaaccccgtcatgagcactgttgccttcctggcatccgtcgttgatccccgagttgct
tctgctgctgcaaagtcagccctcgaagagttctccaagatgaaggaagaggtgcccacg
gccctagtggaagcccacgtgcggaaagtggaagaagcagccaaagtgacaggcaaggcc
gacccagcttttggtctggaaagcagtggcattgcagggaccacatccgatgagcccgag
cggatcgaggagagtggcactgatgagactcggacagaaggccaggccacagaggagaag
aaggagcccaaggaacctcgagaaggagttgggactgtagaggaagagacgaaggagaaa
actagtgagactcccaagaaggatgaggagaaagggaaagaagcagacagtgagaaagag
tcggaaaagagtgatggggaccccacagtggaccctgagaaggagaaggagccaaaggaa
gggcaggaggaagtgctgaaggaggtggtggagtcagagggggagaggaagacgaaagtg
gaacgggacatcggggaaggcaacctctccactgctgctgccgcagccctggccgctgcc
gctgtaaaagccaagcacttggctgctgtggaggaaaggaagatcaaatccctggtggcc
ttgctggtggagacccagatgaagaagttggagattaaactccggcactttgaggagctg
gagacgatcatggaccgagagcgagaagcactggagtatcagaggcagcagcttctggct
gacagacaagccttccacatggagcagctgaagtatgccgagatgcgggcccggcagcag
cacttccagcaaatgcaccagcagcagcaacagcccccgcccgtcctgccccccgggtcg
cagcccatcctgcctgcaggggccactgggccgcccacggtccatggcttggctatggct
caggcctctgtggcccctgcacctgccggcagtggggcccctccagggagcttaggcccc
tctgaacagatcgggcaggcggggccaacagccgtgccacagcagcagcagccagttgga
gcccctcaacccggggcagtcccaccaggggtacccccccctggaccccatggcccctca
ccgtttcccaaccaacaaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcct
cctcctgctccatccatcatcccatttggtagcctagccgactccatcagtattaacctt
ccccctcctcctaacctgcatgggcatcaccaccatctcccatttgccccgggcactctc
cccccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgacc
accaccatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagc
cctgccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccaggt
gagaagggtcctggaggggagaagggcgagggcaaagggtctacgtag
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integrated database retrieval system
