Suncus etruscus (white-toothed pygmy shrew): 126023918
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Entry
126023918 CDS
T09902
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr01524
Platinum drug resistance
setr03430
Mismatch repair
setr05200
Pathways in cancer
setr05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126023918 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
126023918 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
126023918 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
126023918 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
setr03400
]
126023918 (MSH6)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126023918 (MSH6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
126023918
NCBI-ProteinID:
XP_049640294
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Position
12:12948072..12960330
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AA seq
1252 aa
AA seq
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MEGYPWWPCLVYNHPFDGTFIREKGKRSKSVRVHVQFFDDSPTRGWVSKRMLKPYTGSKS
KETQKGGHFYSAKPEILRAMQRADEALTQDKTKRLELAVCDEPSEPEEEEMEVGTSDKSE
GNGLESEEETQPKMEGIRRSSRQFKKLRVFSDSESDTGGSDVEFKPDIKEERSSDGMSDG
AGDSEIEDLESPIKAAPKRKRAGTGNGSIKRKNSKKDANRTSGILSETKSALSGFSVPSS
VSEPSAPVGEDSGQLTVWYHETLEWLKKDKRRDMHRRWPDHPDFDASTLYVPEDFLNSCT
PGMRKWWQIKAQNFDLVIFYKVGKFYELYHMDALIGVSELGLVFMKGIWAHSGFPEIAFG
RYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKHDRVVRREICRVITKGTQTYSVL
EGDPSENYSKYLLSIKEKEGDLSGHTREYGVCFVEASLGKFFIGQFSDDRHCSRFRTLVA
HYPPVQVLFEKGNLSLETKTILKGLLAPSLQEGLAPGSQFWDAAKTLRTLLEEGYFSEQS
GQDGGAMFPEVLKGMTSESDVIGLTPADKSALALSALGGCVFYLKKCLIDQELLSMANFE
EYVPLDSDMISANKPSAVFARTNQRMVLDAVTLNNLEIFMNGTDGSTEGTLLSKVDTCHT
PFGKRLLKQWLCAPLCSPWAINDRLDAIEDLMEVPDKVSEVVELLKKLPDLERLLSKIHT
VGSPLKNQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKSVCKIIEIMEDSIDDFRSKIL
KQIITLQTKSPKGRFPDLSLELNRWDTAFDHEKARRTGLITPKAGFDSDYDQALADIKEN
EQSLLDYLEKQRVRIGCRSIVYWGIGRNRYQLEIPETFANRNLPEEYELKSTKKGCKRYW
TKTIENKLANLMNAEERRDVSLKDCMRRLFYNFDKNHKDWQAAVECIAVLDVLLCLANYS
RGGDGPMCRPVLLLPGEHAPPFLDLKGARHPCITKTFFGDDFIPNDIQIGCDEEEESSKA
FCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEMCRLTPIDRIFTRLGASDRIMSGE
STFFVELSETASILTHATVHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFST
HYHSLVGEYSQNVAVRLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLAN
LPEEIIQKGHRKAREFEKMTQSLRLFREFCLASERSTLDADSLHKLVTLMEP
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtacccctggtggccctgcctggtctacaaccaccccttcgacgggaccttc
atccgtgagaaggggaagaggtccaagtccgtccgtgtccacgtgcagttttttgatgac
agcccaacaaggggctgggtcagcaaaaggatgttaaagccctacacaggttcaaagtct
aaggaaacccagaaaggaggtcatttttatagtgcaaagcctgagatactcagagcaatg
cagcgtgcagatgaagctttgactcaagacaagacgaagaggcttgaactggctgtgtgt
gatgagccttcggagccagaggaagaggagatggaggtgggtacgtctgataaaagtgag
ggtaacgggctggagagtgaggaggaaacgcagcccaaaatggaagggatccggaggagt
agccgtcagttcaagaaactgagggttttttccgactcggagagtgatacaggtggctct
gacgtggagttcaagccagacatcaaggaggaacgcagcagtgacgggatgagtgacggt
gctggcgacagcgagatcgaagatctggagagtccaatcaaagctgctcccaagcggaag
agggcagggaccggaaatggctccattaagaggaagaactccaagaaggatgccaatcga
acctcgggcattttatcagaaaccaagagcgctttgagtggtttctcggtgcccagtagt
gtttcggaacccagtgcccctgttggtgaggatagtggtcagctgactgtctggtatcat
gagacgttagagtggcttaagaaggataagagaagggacatgcacaggaggtggcccgac
caccctgattttgatgcgtctactctctacgtgcctgaggatttcctcaattcttgcacc
cctggcatgaggaagtggtggcagatcaaagcccagaattttgatcttgtcatattttat
aaggtagggaagttttatgagctgtatcacatggatgctctcattggggtcagtgaactg
gggctggtattcatgaagggcatctgggcccattcgggcttccctgaaattgcctttggc
cggtattcagactcgttggtgcagaagggctataaagttgcacgtgtggagcagaccgaa
accccggagatgatggaggcccgatgtcgaaagatggcacatatctccaagcatgaccga
gtggtgaggagggagatctgtagggtcatcaccaaggggacgcagacttacagtgttctg
gaaggagacccatcggagaactacagtaagtatctgctcagtattaaagagaaggagggc
gatctttcgggccacacgcgtgagtacggagtgtgctttgttgaggcctcgctgggaaaa
ttcttcatcggccagttttctgacgaccgtcactgttctcggttccggacgcttgtggcc
cactatcccccagtccaggtcttgtttgagaaggggaacctctcactggaaaccaagacg
attctgaagggcctgctggctccctccctccaggaaggtctggcaccaggctcccagttc
tgggatgcagccaagaccctgcggactctacttgaggaaggctatttttcagaacaatca
ggccaggatggtggggcgatgttccctgaggtgctgaaaggaatgacctcagagtctgac
gttattggcctgacaccagcagacaagagtgcgttggccctctctgctcttggtggttgt
gtcttttacctcaaaaaatgccttatcgatcaggaactcttatccatggctaattttgaa
gagtatgttcccctggattcggacatgatcagtgctaacaaacctagcgctgtctttgct
cgaaccaatcaacgaatggtgctagatgctgtgacattgaataacttagaaatttttatg
aatggaacagatggttccactgaggggaccctcttgtcgaaggttgatacgtgccacacc
ccatttggcaagcggcttttaaaacagtggctgtgcgccccgctctgtagcccttgggcc
atcaatgaccgtctagatgctatagaggatctcatggaagtgcctgacaaagtctcagag
gtggtggagcttctcaagaagcttccagacctggagaggctgctgagtaaaattcatact
gttgggtctcccctcaagaaccagaatcaccccgatagccgggctataatgtatgaggag
acaacatacagcaaaaaaaagatcattgattttctttctgccctggaaggcttcaagagc
gtatgtaaaattattgagatcatggaggatagcattgatgacttcagatctaaaattctt
aaacagatcattactctgcagacaaaaagccccaagggccggtttcctgatttatctcta
gaactgaaccgctgggataccgcctttgaccatgaaaaggcccgaaggactgggctgatt
actcccaaagcaggatttgactcggattatgaccaggctcttgcagacattaaagaaaat
gaacagagcctcctagactacttggagaaacagcgcgtcagaatcggttgtcggtccata
gtctactgggggatcggtaggaatcgctaccagttagaaattccagagactttcgccaac
cggaatttgccagaagagtatgagttgaaatctaccaagaaaggctgtaagagatactgg
acaaagaccatcgaaaataaactggctaatctgatgaatgctgaggagcgcagggatgtg
tcactcaaggactgcatgcggcgtctcttctataactttgacaagaaccacaaggattgg
caggcggctgtggagtgcattgcagtactggatgtcttactgtgcctggctaactacagc
cgagggggtgacggtcctatgtgtcgcccagtgcttctcttgccgggagaacacgcgccc
cctttcttagaccttaaaggagcacgtcatccctgcatcacaaagactttttttggagat
gactttatccctaatgatattcaaataggctgtgatgaagaggaggaaagcagtaaagca
ttttgtgtgctggttactggaccaaatatggggggcaagtctacactgatgagacaggct
ggtctcttggctgtgatggctcagatgggttgttacgtacctgctgaaatgtgtaggcta
acaccaattgatagaatattcaccagacttggtgcctcagacagaataatgtcaggtgaa
agtacattctttgttgaattgagtgagacagccagtatacttacacatgcaacagtccat
tctttggtgcttgtggatgaattaggaagagggactgccacatttgatgggacagcaata
gcaaatgccgttgttaaagaacttgctgagaatatcaagtgtcgcacgttattttctacc
cactaccactcgttagttggagaatactctcagaatgtcgcagttcgccttggacacatg
gcttgcatggtagaaaacgaatgtgaagatcccagccaggagaccatcaccttcctctat
aaattcatcaaaggagcttgtcctaaaagttatggctttaatgcagcaagattggctaat
cttccagaggagattattcaaaagggacacagaaaagcaagagaattcgagaagatgact
cagtcactgcggttatttcgggaattttgtcttgctagtgaaagatccactctcgatgct
gactctctccataagctggtgactttgatggaaccataa
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