Suncus etruscus (white-toothed pygmy shrew): 126023922
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Entry
126023922 CDS
T09902
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr01524
Platinum drug resistance
setr03430
Mismatch repair
setr05200
Pathways in cancer
setr05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126023922 (MSH2)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
126023922 (MSH2)
09162 Cancer: specific types
05210 Colorectal cancer
126023922 (MSH2)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
126023922 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
setr03400
]
126023922 (MSH2)
DNA repair and recombination proteins [BR:
setr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
126023922 (MSH2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
126023922
NCBI-ProteinID:
XP_049640298
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All DBs
Position
12:12807892..12844826
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AA seq
934 aa
AA seq
DB search
MAVQPKDTLQLDGAAELGFVRFFQAMPDKPSTTVRLFDRGDFYTAHGGDAILAARDVFKT
QAVVKFLGPAGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVFKNRAGNKASKENDWYLA
FKASPGNLSQFEDVLFSNTDTSASIGVVGIRVSTADGQRQVGVGYVDSAQRKLGLCEFAD
NDQFSNLESLLIQVGPKECILPVGDAAGDMGKLRQVIQRGGILITERKRTDFSTKDIYQD
LNRLLKGKKGEHMNSAVLPEMENQVAVSSLSAVIKFLELLADDSNFGQFELTTFDFGQYM
KLDMAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLLDKSRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQAINQLPSVIKA
LEKYEGKYHTLLVAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMNNLEKKIQSTLSSAARELGLDPGKQIKLDSSTQLGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSALTSLNEEYMKNKTEYEEAQDAIVKEIVNISSGYVEPMQIFNDVLA
QLDAVVSFAHVSNGAPVPYVRPVILERGQGRLLLKAARHACVEMQTDIAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGLIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALANQVPTVQNLHVTALTSEETLVMLYQVKRGVCDQSFGIHVAELANFPRHV
VESARQKAQELEEFQNIGEPPCDDDMEPAAKRCYLEREQGEKIIQEFLAKVKQVPFNEMS
QENITNKLKQLKAEVVAKNNSFVNEIIKRIKVTE
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaggacacgctgcagctggacggcgcggccgagctgggcttcgtg
cgcttcttccaggccatgcccgacaagccgagcaccacggtgcgcctgttcgaccgcggc
gacttctacacggcgcacggcggggacgcgatcctggccgcccgcgacgtcttcaagacc
caggcggtcgtcaagttcctgggcccggcaggagcaaagactctggagagtgttgtgctg
agtaagatgaattttgagtcttttgtaaaagatcttctgctggttcggcagtatcgagtt
gaagttttcaagaatagagctggaaataaggcatccaaggagaatgattggtatttggcg
tttaaggcctccccgggaaacctctctcagttcgaggacgtccttttcagcaacactgat
acatcagcatccattggcgtggtgggcatcagggtgtcaacagcagatggccagcggcag
gtgggcgtcgggtatgtggactcagctcagcgcaagctcggcctctgcgagttcgcagac
aatgaccagttctccaaccttgagtcactcctgatccaggtcgggcccaaggaatgcatc
ctgcctgtgggggacgctgctggggacatggggaaactgaggcaggttattcagagagga
ggaattctgatcacagagcggaaaagaactgacttttccacaaaagacatttatcaggac
ctcaaccgcttgttgaaaggcaagaaaggggaacacatgaatagcgccgtcttgccagaa
atggagaatcaggtcgccgtttcctcactgtctgcagtaatcaagtttctggagctctta
gcagatgactccaactttgggcagtttgaactgaccactttcgacttcggccagtacatg
aagttggacatggcagctgtcagagccctgaatcttttccagggttctgtggaagacacc
actggctcgcagtcactggctgccttgctgaataaatgcaaaacccctcaaggacaaagg
ctggtgaatcagtggatcaagcagccactcctggataaaagcagaatcgaagagaggttg
aatctggtggaagcatttgtcgaagatgcagaattgaggcagagcctgcaggaagatctg
ctccgtcgtttccccgatctgaaccggctggctaagaagttccagcggcaggctgcgaac
ttgcaggactgctaccggctctaccaggccatcaatcagctcccgagtgtcatcaaggcg
ctggagaagtatgaaggaaaataccatacgttgctggtggctgtatttgtgactccgctt
attgatcttcgttctgatttctccaagttccaagaaatgatagaaacaactttagatatg
gatcaggtggaaaatcatgaattccttgtcaaaccttcattcgatcctaatctgagcgaa
ttgagagaaataatgaacaacttggaaaagaagattcagtccacattatcaagtgccgct
agagagctaggcttggatcctggcaaacagattaaactggactccagcacgcagttgggg
tattacttccgtgtaacctgtaaagaggaaaaggtccttcgcaacaataaaaacttcagt
actgtagacatccagaagaatggtgtcaagttcaccaacagtgcactgacctctctcaat
gaagagtacatgaaaaacaaaactgagtatgaagaagcccaggatgcgattgttaaagaa
attgtcaatatttcttcaggctacgtggaaccgatgcagatattcaacgacgtgctggcc
cagctcgatgctgttgtcagcttcgcccatgtgtccaacggcgcaccggtcccctacgtg
cggcccgtgatcctggaacggggccagggacgcctcctcctgaaagcggcccggcatgcc
tgcgttgagatgcaaaccgacatcgcctttatccctaacgacgtccacttcgaaaaggac
aagcagatgttccacatcatcacaggtcccaatatgggaggcaagtccacatacattcgc
cagacgggcctgatcgtcctcatggcccagattgggtgcttcgtgccctgtgagtccgct
gaggtgtcgatcgtggactgcatcctggcccgagttggggctggcgacagtcagctcaag
ggggtgtccacgttcatggccgaaatgctggagacagcatccatcctcaggtccgcaacc
aaagactccctgatcatcatcgatgagttgggccgaggaacctccacctatgatggcttt
ggtctggcctgggccatctctgagtacatcgccaccaagattggggccttctgcatgttc
gcaacccacttccacgagctcaccgccttggccaaccaggtccccacagttcagaatctg
catgtcactgcactgacctccgaggagaccctggtcatgctgtaccaggtgaagagaggt
gtctgtgatcagagttttggcatccatgtggcagagctcgcgaatttcccaaggcatgtg
gtcgagagtgcaaggcagaaagcccaggagctagaagagtttcagaatatcggggaacca
ccctgtgatgatgacatggagcctgcagctaagagatgctatctggaaagagagcaaggt
gaaaaaattatccaggagtttctggccaaggtcaaacaagtgcccttcaatgaaatgtcg
caagaaaacatcaccaacaagctcaaacagctgaaagcagaggtggtagcaaagaataat
agttttgtaaacgaaatcattaagcggatcaaggtgaccgagtga
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