Suncus etruscus (white-toothed pygmy shrew): 126024400
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Entry
126024400 CDS
T09902
Symbol
SPTBN1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04517
IgSF CAM signaling
setr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
126024400 (SPTBN1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
126024400 (SPTBN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
setr04812
]
126024400 (SPTBN1)
Cytoskeleton proteins [BR:
setr04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
126024400 (SPTBN1)
Intermediate filaments
Intermediate filament-binding proteins
126024400 (SPTBN1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SCAR_helical
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
126024400
NCBI-ProteinID:
XP_049640767
LinkDB
All DBs
Position
12:18642380..18763141
Genome browser
AA seq
2362 aa
AA seq
DB search
MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALL
LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNL
AEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQA
VVAVARELEAENYHDIKRITARKDNVFRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYI
MDWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIGIQAERVRAVNASAQKFATDGEG
YKPCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEKI
LSSDDYGRDLTSVLRLLSKHRAFEDEMSGRSGHFEQALREGEAMIAEEHFGSEKIRERIA
DIRGQWASLAELSAVRKRHLEEASLLHQFQADADDVDAWMLDILKIVSSSDVGHDEYSTQ
SLVKKHKDVAEEIASYRPALDSLHEQAGALPAEHAASPAVQGRLAGMEERYREVAELTRL
RKQALQDTLALHKMFNEADACELWIDEKEQWLDNMQIPEKLEDLEVIQHRFESLEPEMNS
QASRVAVVNQIARQLMHSGHPSEKDIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNY
HLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAE
KLESEHPDQAQAILARLAEINSVWEEMKTALRNREASLGEASKLQQFLRDLDDFQSWLSR
TQTAIASEDMPNTLMEAEKLLTQHEGIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMFL
RQRLQALDTGWNELHKMWENRQSLLSQSHAYQQFLRDTKQAEAFLNNQEYVLAHTEMPTT
LEGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLASDGNISSDRIQEKVDSIDDRHRKN
REAASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELASNKEWLDKIEKEGMQLISEKPETEAVVKEKLTGLHKMWEVLESTTQTKAQRLFDAN
KAELFTQSCADLDKWLHGLETQIQSDDYGKDLTSVNILLKKQQMLENQMEVRKKEIEELQ
SQAQALSQEGKSTDEVDSKRLTVQTKFRELLEPLNERKQYLLASREIHQFNRDVEDEILW
VGERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQHIVTDSSPNAE
AIRQRLADLRQLWGLVIAEAEKRHKRLEEAHRAQQYYFDAAEAEAWMSEQELYMMSEEKA
KDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVAEGHPESERISMRQSKVDKLYA
GLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFR
EFARDTGNIGQERVDTVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQIL
AASYELHKFYHDAKEILGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVR
QLQEDAARLQAAYAGDKAEDIQKRENEVLGAWKALLDACEGRRARLVDTGDKFRFFSMVR
DLMLWMDDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARK
HYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYLS
SREIGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRQQEEEERKRRPP
SPGPSTKVSEEAESQQWDASKGEAVSHNGLPADQGSPRMAEKGDTSDLVNGATEQRTSSK
ESSPIPSPTSDRKAKTGLPTQGAATLPARTQEAPSAQMEGFLNRKHEWEAHNKKASSRSW
HNVYCVINNQEMGFYKDAKTAASGIPYHSEVPVSLRDAVCEVALDYKKKKHVFKLRLSDG
NEYLFQAKDEEEMNTWIQAISSAISSDKQEVSASTQSTPASSRAQTLPTSVVTITSESSP
GKREKDKEKDKEKRFSLFGKKK
NT seq
7089 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccaccgtggccacggactacgacaacattgagattcagcagcagtacagtgat
gtcaacaaccgctgggacgtggatgactgggataatgagaacagttctgcgcggctcttc
gagagatcccgcatcaaggcgctggcagatgagcgcgaagcagtgcagaagaagaccttc
accaagtgggtcaactctcacctggctcgtgtgtcctgccgcatcacagacctgtacacc
gacctccgcgatggacggatgctcatcaagctgctggaggtcctgtctggggagcggctg
cccaagcccaccaagggccgcatgcgtatccactgcctggagaacgtggacaaggcgctg
cagttcctgaaggagcagagggtccacctggagaacatgggatcccacgacattgtggat
gggaaccaccggctcacgctcggccttatctggaccatcatcctgcgcttccagatccaa
gatatcagcgtggaaacggaagacaacaaagagaagaagtcagccaaggatgcactgctg
ctgtggtgccagatgaagacggccgggtacccgaatgtcaacatccacaacttcaccacc
agctggcgggacgggatggccttcaacgcactgatccacaagcaccggcctgacctgatt
gacttcgacaagctgaagaaatccaatgcgcactacaatctgcaaaatgcatttaacctg
gcagaacaacacctgggcctcacgaaactgctggaccctgaggatatcagtgtggatcac
cccgacgagaagtccattatcacctatgtggtcacctactaccactacttctccaagatg
aaggcgttggccgtggaagggaagcgcattgggaaggtgcttgacaatgctattgaaaca
gaaaaaatgattgagaagtacgaatccctggcctctgaccttctggaatggatcgaacag
accatcattatcctgaacaatcgcaaattcgccaactcactggttggtgtccagcagcag
ctgcaagcattcaacacttaccgcacggtggagaaaccacccaagtttactgagaagggg
aatctggaagtcttgctcttcactatccagagcaagatgagagctaacaaccaaaaggtt
tacatgccccgtgaaggaaaactcatctccgacatcaacaaggcctgggaacgactggaa
aaggcggagcacgagagggaactggctctgcgcaatgagctcatccggcaggagaaactg
gaacaactcgcccgcagattcgaccgcaaggcggcgatgcgagagacgtggctgagcgag
aaccagcgtctggtgtctcaggacaacttcgggtttgacctacccgccgtggaagctgcc
acgaaaaagcacgaggccatcgagacagacattgcagcctacgaggagcgagttcaggct
gtggtggctgtggccagggagctggaggccgagaactaccacgacatcaagcgcatcacg
gcacggaaggacaatgtcttccggctctgggagtacctgcttgagctgcttcgggctagg
cggcagcgtctggagatgaacctggggctgcagaagatcttccaggagatgctctacatc
atggactggatggacgagatgaaggtgctgctgctgtctcaggattatggcaaacacctg
ctgggcgtggaggacctgctccagaagcacgcgctagtggaggccgacattggcatccaa
gctgagcgtgtgagggccgtcaatgcatccgcccagaagttcgccaccgatggggaaggt
tacaagccgtgcgacccgcaggtgatccgggaccgtgtggcccacatggagttctgctac
caagagctgtgccaactggcagccgagcgccgggcacggctggaggagtctcggcggctc
tggaagttcttctgggagatggctgaagaggagggctggatccgcgagaaggagaagatc
ctgtcctccgacgactatggccgggacctcaccagcgtcctacgcctgctcagcaagcac
cgtgcctttgaggacgagatgagcggccgcagcggccacttcgagcaggcactgcgcgag
ggcgaggccatgattgccgaggagcacttcggctcggagaagatccgggagcgcattgcc
gacattcggggccagtgggctagcctagcagagctctcggccgtgcgcaagcgacacctg
gaagaggcctcgctgctgcaccagttccaggccgacgccgacgacgtggatgcctggatg
ctggacatccttaagatcgtgtccagcagcgacgtgggccacgacgagtactcgacgcag
tccctggtcaagaagcacaaggacgtggccgaggagatcgccagctaccggccggccctg
gactcgctgcacgagcaggcaggcgcactgcccgctgagcatgccgcgtcccctgccgtg
cagggccggctggcgggcatggaggagcgctaccgcgaggtggccgagctgacgcggctg
cgcaagcaggccctgcaggacaccctggcattgcacaagatgttcaacgaggccgacgcc
tgcgagctctggatcgacgagaaggagcagtggctggacaacatgcagatccctgagaag
ctcgaggatctagaggtgatccagcacaggtttgagagcctggagcccgagatgaacagc
caggcttcgcgggtggccgtggtgaaccagatcgctcggcagctgatgcacagtggccat
ccgagcgagaaagacatcaaggcgcagcaggacaagctcaacaccaggtggagtcagttc
cgggagctggtggaccgcaagaaggacgcacttctctctgccctgagcattcagaactac
cacctggagtgcaacgagaccaaatcatggatccgggagaagaccaaggtgatcgagtcc
acccaggacttgggcaacgacctggcaggtgtcatggcgctgcagcgcaagctgacgggc
atggagcgggacctggtggccatcgaggccaagctgagcgacctgcagaaggaggctgag
aagctggagtcagagcacccagaccaggcgcaggccatcctggcacggctggcggagatc
aacagcgtgtgggaggagatgaagaccgccctgcggaaccgggaggcttccctgggagag
gccagcaagctgcagcagttcctgcgggacctggacgacttccagtcatggctgtcacgg
acacagaccgccatcgcctccgaggacatgcccaacacgctgatggaggctgagaagctg
ctcacgcagcacgagggcatcaagaatgagatcgacaactacgaggaggactaccagaag
atgcgggacatgggtgagatggtgacgcaaggccagactgatgctcagtacatgttcttg
cgccagcggctccaggcgctcgacacaggctggaacgagctgcacaagatgtgggaaaac
aggcagagcctcctgtcccagtcccatgcctaccagcagttcctgcgcgacaccaagcag
gccgaggcctttctcaacaaccaggaatatgtcttggcgcacactgaaatgcctaccacc
ctggaaggcgcagaggccgctatcaagaagcaagaggacttcatgaccaccatggacgcc
aatgaggagaagatcaacgcagtggtggagaccggccggagactggcgagcgacggcaac
atcagctcagaccgcatccaggagaaggtggactccattgatgacagacacaggaagaac
cgcgaggcagccagtgaacttctgatgcggctgaaggacaacagggaccttcagaaattc
ttgcaagattgtcaggagctctctctctggatcaatgagaagatgctcacagcccaggac
atgtcatacgacgaagccagaaacctacacagcaaatggttaaaacatcaggcattcatg
gcagagctggcatccaacaaagaatggctggacaaaattgagaaagagggaatgcagctc
atttctgaaaagccagagacggaagctgtggtgaaggagaaactcactggtctgcacaaa
atgtgggaagtgctggagtctaccacccagacaaaggcccagcggctctttgatgccaac
aaggccgagctgttcacccagagctgtgctgacctggacaagtggctgcatggtctggag
acccagatccagtccgatgactatggcaaagacctcacaagtgtcaacatcctgctaaaa
aagcagcagatgctggagaaccagatggaggtgaggaagaaggagatcgaggagctgcag
agccaggcccaggccctgagccaggaggggaagagcacagatgaggtggacagcaagcgg
ctcacagtgcagaccaagtttcgggagctgctagagcccctgaatgagcggaaacagtac
ctgctggcatctagagagatccaccagttcaatagagacgtggaggatgagatcctgtgg
gttggagagcggatgcccttggccacatccacagaccatggtcacaacctgcagacggtg
cagcttctgataaagaagaatcagaccctgcagaaggagatccagggccaccagccacgc
atcgatgacatcttcgagcggagccagcacattgtgacggatagcagccccaacgccgag
gccatccgtcagcggctggctgacctgcggcagctgtggggcttggtcatcgccgaggct
gagaagcggcacaagcggctggaggaggcgcatcgtgcccagcagtactacttcgacgca
gctgaggccgaggcctggatgagcgagcaggagctgtacatgatgtccgaggagaaggcg
aaggatgagcagagtgccgtgtccatgttgaagaaacatcagattttggagcaagctgtg
gaggactatgcagagacggtacaccagctatccaagaccagccgagccctggtggctgaa
ggccatcctgagagcgagcgcatcagcatgcgacagtctaaggtggacaagctgtatgca
ggcctgaaggacctggccgaggagcgcagggggaagctggacgagcgacaccggctgttc
cagctcaaccgggaggtggacgacctggagcagtggatcgccgagcgggaggtggtcgcc
ggctcacacgagctgggccaggactacgagcatgtcacgatgctgcaggaacggttccga
gaatttgcccgggatacaggcaacatcggccaggagcgcgtagacacagtgaatcatatg
gctgacgaactcatcaactctgggcactcggacgcggccaccatcgcagagtggaaggat
gggctcaacgaggcatgggccgacctgctggagctcatcgacacacggacgcagatcctg
gctgcgtcctatgagctgcacaagttctaccacgatgccaaggagatcctcgggcgcatc
caggacaaacacaagaagttgcccgaggagctggggcgagaccagaacacagtggagacc
ctgcagcgcatgcacaccaccttcgagcacgacatccaggccctcggcacacaggtgcgg
cagctgcaggaggacgcagcccggctccaggcggcctatgcaggcgacaaggctgaggac
atccagaaacgagagaacgaggtgctgggagcctggaaggccttgttggacgcgtgtgag
ggccgccgggcacggctggtggatactggcgacaagttccgcttctttagcatggtgcga
gacctaatgctgtggatggacgacgtcatccggcaaattgaggcacaggagaagcccagg
gacgtctcctccgtggagctcttaatgaacaaccatcagggcatcaaggctgagatcgac
gcccggaatgacagtttcaccacctgcattgagcttgggaaatccctgctggcgagaaaa
cactatgcatctgaggagatcaaggagaagttactgcagttgacagagaagagaaaagaa
atgatcgacaagtgggaagaccggtgggaatggctaagactgatcctggaggtgcatcag
ttctccagggacgccagtgtggccgaggcctggctgctggggcaagagccatacctgtcg
agccgagagataggccagagcgtggacgaggtggagaagctcatcaaaaggcacgaggcc
tttgagaagtccgcggccacctgggatgagagattctctgctctggagagactcactacg
ttggagctactggaagtgcgaagacagcaagaggaagaagagagaaaacgacggccacca
tcacctgggcccagcacgaaagtttccgaggaggcagagtcccaacagtgggacgcatcc
aaaggagaggcagtgtcccacaacggtttgccggccgaccagggatccccacggatggca
gaaaagggggacacaagcgacttggtcaacggcgccacggagcagaggaccagttccaag
gagtccagtcccatcccttcgcccacgtccgatcgcaaagccaagactggtctcccgact
cagggtgccgccacgctgccggcccggacacaggaggcgccttcagcccagatggaaggt
ttcctgaaccgcaagcacgagtgggaggcccacaacaagaaggcttcgagcaggtcctgg
cataatgtctactgtgtcatcaacaaccaagaaatgggtttctacaaagatgccaagacg
gctgcctcagggatcccctaccacagcgaggtccccgtgagcctacgggacgctgtctgc
gaggtggcacttgattacaagaagaagaaacatgtcttcaagctgagactgagcgacggc
aatgagtacctcttccaagccaaagatgaggaggaaatgaacacttggatccaggccatc
tcctccgccatctcctccgacaagcaggaggtgtccgccagcacccagagcacgccggca
tccagccgggcacagaccttgcccaccagcgtcgtcaccatcaccagcgagtccagtccc
ggcaagcgggagaaggacaaagaaaaggacaaagagaaacgattcagcctatttggcaaa
aagaaatga
DBGET
integrated database retrieval system
