Suncus etruscus (white-toothed pygmy shrew): 126024476
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Entry
126024476 CDS
T09902
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126024476 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126024476 (POLR1A)
Enzymes [BR:
setr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126024476 (POLR1A)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
126024476 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
126024476
NCBI-ProteinID:
XP_049640860
LinkDB
All DBs
Position
12:complement(52594263..52652209)
Genome browser
AA seq
1714 aa
AA seq
DB search
MLGTKNVPWRRLQGISFGMYSPEELKKLSVKSITNPRYLDSLGNPALNGLYDLALGPADS
KEVCATCVQDFSSCSGHLGHIELPLTVYNPLLFDKLYLLLRGACLNCHMLTCPRAVIHLL
VCQLKVLEVGALHAVYELERILNRFLEENPDPTGCEIQDELEQHTASVIQNNLLGPHGAH
VKNVCESRSKLISHFWKTHMFAKRCPHCKTGRSVVRKEHNSKLTITYPAVVHKKAGQDTE
PLVPGPEEAQMGKRGYLTPSIAREHLSAIWKNEGFFLNYLFSGLADVGMEPGFNPSMFFL
DFLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDIVLIRKLLAVMAQEHELPQEVAEHA
PVEEKDSSVVMDRSFLSLLPGQSLPDKLYNIWIRLQSHVNIVFDSEMDKLMMEKFPGIRQ
ILEKKDGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQE
LRQAVINGPNVHPGASMVINEDGSRTALSAIDLTQREAVAKQLLTPATGPLKPQGTKIVC
RHVKNGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYILACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFSREQYMELVYR
GLTDKVGRVKLFPPAILKPCPLWTGKQIVSTLLINIIPEDHLPLNLSGKAKISGKAWVKE
TPRPIPGFNPDSMCESQVIIRFGELLCGVLDKAHYGSSAYGLVHCCYEVYGGETSGRVLT
CLARLFTAYLQLYRGFTLGVEDILVKPRADMKRHRIVEESAHCGSRAVRAALNLPEAASC
DEVRGKWQDAHLGKDQRDFNMIDLKFKEEVNHYSNEINKVCMPFGLHRQFPDNNLQMMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGI
RPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLSVRDSDGSVVQFLY
GEDGLDIPRTQFLQPRQFPFLASNYEVIMKSKRLDEVLSKADPQKALRHFRAIKKWQSKH
SGALPRRGAFLKFSQEIQAEVKAANLEGANQNGRSPDTQQMLSMWYELDERSRRKYQKRA
APCPDPSLAVWRPDIYFASVSETFEKKMDDYSCEWAAEVTQSHEKSMLSLESLRTLLQLK
WQRALCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANI
KTPMMSVPVFNTKKALRRVKSLKKQLTRVCLGEVLQKIDVQESFSVGERQSKLRVYQLRF
EFLPHAYYHQEKCLRPEDILHFMETRFFKILMESIRKKNNKASAFRNVNTRRATQRDLDG
DGDGERNGAQQEEGEEEEGHVVNAEAEEGDADASDAKRKEKQEEEVDYESEEEEEKGEEE
EEAPEDGPMHTDSTHRTPEQENDTGLGAEEDALLQAPPTRPRKTAYHEAPAVESRVQAVL
ECHPFIQGYQFDTEQNLWCEVTLKLPLMKINFDMSSLVMTVAQSAVVYATKGITRCLLNE
TTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIR
DVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFQFLKQATM
MGAHDELRSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgttgggcaccaagaacgtgccctggcggcgcctgcagggcatttcctttgggatgtat
tcgcccgaagagctcaagaaactcagtgtcaagtcaatcacgaaccctcggtacctggac
agcttggggaatccggcactgaatggcctctacgatctggccttgggtcctgccgactcc
aaggaagtgtgtgccacctgtgtgcaggactttagcagctgctccgggcacttgggccac
atagaactcccactcactgtctacaaccctctcctcttcgataaactgtacctgctgctc
cggggagcttgtttaaactgtcacatgctgacttgcccccgtgctgtgattcatctctta
gtctgtcagctgaaagttctggaagtgggagccctgcatgccgtctatgagctggagaga
atcctcaacaggtttctggaagaaaatcctgaccccactggctgtgaaattcaggatgag
ctggaacagcacactgcatcagtcatacagaacaacctcctggggcctcatggtgcacat
gtgaaaaatgtctgtgaaagcaggagcaaactcatctcccacttctggaagacgcacatg
tttgccaaacggtgcccacattgcaagactgggcggtcagttgtccgaaaggagcacaat
agcaaactgacaatcacttaccccgctgttgttcacaagaaagctggccaggacacggag
cctttagttcccggacctgaggaagcacagatgggaaagagagggtacctgacccccagc
atcgcccgggagcatctttctgccatttggaagaatgaaggattctttctgaactacctt
ttctcgggactggcagacgttggcatggagcccggatttaatcccagtatgttctttctg
gatttcttggtggtgccaccctcaagatatcgccctgttaatcgcttgggggaccagatg
ttcaccaatggccagacagtgaacttgcaggcagtcatgaaggacattgtgctcatccgg
aagctgctggctgtgatggcccaggaacacgagctgccccaagaggtcgccgagcatgcc
ccagttgaggagaaagattcttccgttgtcatggaccggtcctttctgagtttgctacct
ggtcaatccctaccagataaactttacaacatttggattcgccttcagagccatgtcaat
attgtgtttgatagtgagatggacaaattaatgatggaaaaatttcctggtatcagacag
atcctggagaagaaggatggtttattcagaaagcacatgatggggaagcgtgtggactat
gcagcccgctccgtcatctgtccagacatgtacatcaacacgaatgagatcggaattccc
atggtgtttgccaccaaactgacctacccacagcctgttaccccctggaacgttcaggag
ctgaggcaggcggtcatcaatggccctaacgtacatcctggggcctccatggtcatcaat
gaagatggcagccgcacagccctgagtgccatcgatctgacccagagggaagccgtggcc
aaacagctcctgacaccagccacagggcctctgaagccccaggggacaaagattgtgtgc
cggcatgtcaagaacggggacattctcctgctgaaccggcagcccaccctgcacagaccc
tctatccaggctcaccatgcccgcattctacccgaagagaaagtcttgcggctccactac
gccaactgcaaggcctacaacgcagactttgacggtgatgagatgaatgctcacttcccc
cagagtgaactgggccgagctgaagcctacatcctggcctgcacagaccagcagtacctt
gttcctaaggatggccaaccattggcagggttgatccaagatcacatggtttctggtgca
aacatgactatccgaggatgctttttctcccgggagcaatatatggagctggtgtaccga
ggactcacagacaaagtgggacgtgtgaaactcttcccgcctgccatcttgaagccatgt
ccattgtggacaggaaagcagatcgtgtccacgctgctcatcaacattatcccagaggac
cacctcccactcaacctgtcggggaaggcgaagattagtgggaaggcctgggtcaaggag
acccctcggcccatccctggctttaatccagactccatgtgcgagtcccaggtgatcatc
aggtttggggagctgctctgcggggtgctggacaaggcgcactatggcagctctgcctat
ggcctggtgcactgctgctacgaggtctatgggggagagaccagcggccgggtcctcacc
tgcctggcccgactcttcactgcctacctgcaactctacagaggcttcactttaggtgtg
gaagacatcttggtgaagccaagggcagatatgaagaggcacaggattgttgaagagtct
gcccattgcgggtcccgggctgtcagggcagcgttaaacctgccagaggctgcatcatgt
gatgaggttcgaggaaaatggcaggatgcccacctgggcaaagaccagagggattttaac
atgattgatctgaagttcaaggaggaagtgaaccattacagcaacgagattaacaaggtg
tgcatgccctttggcctgcaccgacagttcccagacaacaacctgcagatgatggtgcag
tccggagccaaggggtccaccgtgaacaccatgcagatctcatgcctgctgggccagatt
gaactggaaggtcggagacccccactgatggcatctggcaagtcgctaccctgttttgag
ccctacgagttcactcccagagctggtggctttgtcacaggcaggttccttactggcatc
cggcctccggaattcttcttccactgcatggcaggacgagagggtctggtcgacacagcc
gtgaaaaccagccgctctggctaccttcagaggtgcatcatcaagcacctggagggcctg
gtggtccaatatgacctgtcagtacgggacagcgacggcagcgtggtccagttcctgtat
ggggaggatggcctggacatcccccggactcagttcctgcagccccggcagttccctttt
cttgccagcaactatgaggtgataatgaaatcgaagcgtcttgatgaagttttgtccaag
gcggacccccagaaggcccttcgtcatttcagagctatcaagaagtggcagagcaagcac
agtggcgccctgccgaggagaggcgccttcctgaaattctctcaggaaattcaggccgaa
gtgaaagccgccaacctcgagggtgccaaccagaatggccgcagccctgacactcagcag
atgctgagtatgtggtacgagttagatgagcgtagccggaggaaataccagaagcgggca
gccccgtgccctgaccccagtctggctgtctggcgcccggacatctactttgcatctgtg
tcagaaacgtttgagaagaagatggatgactacagctgcgagtgggcagccgaggtcaca
cagagtcacgagaagtcaatgctttctctcgaaagtctcaggaccctgctgcagttgaag
tggcagcgtgccctctgcgacccaggcgaagctgtggggctgctggcagcccagagcatc
ggggagccctccacacagatgacgctcaacaccttccactttgcaggcagaggagagatg
aatgtcaccctgggcattccaaggctgcgggagattctcatggtggccagcgcaaacatc
aagacccccatgatgagtgtgccagtgttcaacaccaagaaggcactgaggagagtaaag
agcctgaagaagcagctcaccagggtgtgcttgggagaggtgttgcagaagattgatgtc
caggagtccttctctgtcggggagaggcagagcaagttgcgagtgtaccagctgcggttt
gaattcctgcctcacgcgtattaccaccaggagaagtgcctgagacctgaggacatcttg
cacttcatggaaaccagattctttaaaattttgatggaatccatccgaaagaagaataac
aaagcctcggctttcaggaacgtcaacacacggagagccacccagagggacctagacggt
gatggggacggggaacggaatggggcacaacaggaagaaggggaggaggaggaggggcat
gttgtgaatgctgaagccgaagagggcgacgctgatgcctcagatgccaaacgcaaggaa
aagcaagaggaggaggtggattacgagagtgaagaggaggaagagaaaggggaggaggag
gaggaggcaccggaggacgggcccatgcacacagacagcactcacagaacccccgagcaa
gagaatgacacaggcttaggcgccgaggaggatgcgctgctgcaggctccccctactcgg
cctcggaaaactgcctaccatgaagccccagctgtggagagccgggttcaggctgtgctc
gagtgtcaccccttcatccagggctaccagttcgacacggagcagaacctgtggtgtgag
gtgacattaaagctccctctgatgaagattaactttgatatgagctccctggtcatgact
gtggcccagagcgctgttgtctacgcaactaagggcatcacgagatgtctcctgaatgag
acgaccaatagcaagaatgagaaggagcttgtcttaaacacggaagggatcaacctccca
gagctgttcaagtatgctgaggtgttggatctgcgccgcctctactccaatgatatccat
gccatggccaacacctacggcattgaggctgcgctgcgggtgattgagaaggagatccga
gacgtgttcgctgtgtatggcattgcggtggatccccgccatctgtccctggtcgctgac
tacatgtgcttcgagggtgtttacaagccactgaatcgctttgggatccagtccaactct
tccccgctgcagcagatgacgtttgaaaccagctttcagtttctgaagcaggccaccatg
atgggagcccacgatgagctgcggtccccctcagcctgcctcgtggttggaaaagtcgtc
aagggaggaacaggcctgtttgaactcaagcaaccactgaggtag
DBGET
integrated database retrieval system
