Suncus etruscus (white-toothed pygmy shrew): 126024488
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Entry
126024488 CDS
T09902
Symbol
USP39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126024488 (USP39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
126024488 (USP39)
Spliceosome [BR:
setr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
126024488 (USP39)
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
126024488
NCBI-ProteinID:
XP_049640879
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Position
12:52241169..52271398
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AA seq
567 aa
AA seq
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MSGRSKRESRGSTRGKRESESRSSSGRVKRERDRERESDVPAARLSPVRVKREVEAAGTR
VAPAAPPVVPAARVKREREADEDSEPEREVRAKNGRVDSEDRRSRHCPYLDTINRSVLDF
DFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTLKFYCLPDN
YEIIDSSLEDITYVLKPTFTKQQITNLDKQAKLSRAYDGTTYLPGIVGLNNIKANDYANA
VLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHE
MLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSALGGTKKKKKTIVTDVFQGSMRIFTK
KLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLTLDLPTAPLYKDEKEQLIIPQVPLFNI
LAKFNGITEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNV
DLREYLSEEVQAVHKNTTYDLIANIVHDGKPSEGSYRIHVLHHGTGKWYELQDLQVTDIL
PQMITLSEAYIQIWKRRDNDETNQQGA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgtccggccggtccaagcgggagtcccgcggctcgacccgcgggaagcgcgagtccgag
tcccggagcagctcgggccgcgtgaagcgggagcgcgaccgggagcgggagagcgacgtg
ccggccgcccggctcagcccggtgcgcgtgaagcgggaggtcgaggcggccggcacgcgc
gtggccccggcggcgcccccggtcgtcccggcggcgcgggtcaagcgggagcgcgaggcg
gacgaggactcggagcccgagcgggaggtgcgagcgaagaatggccgagtggattcagag
gatcgaaggagccgacactgcccgtacctggataccattaacaggagtgtgttggacttt
gattttgagaagctgtgttccatttctctctcccatataaatgcatatgcctgcttggtg
tgtggcaagtactttcagggccggggtttgaagtctcatgcctatattcacagtgtccag
ttcagccatcacgtctttctaaatctccacacccttaagttttactgcctcccagacaac
tatgagattattgattcctcgctggaggatatcacgtatgtgttgaagcccacgtttaca
aagcagcagatcacaaacctcgacaagcaagcgaaactgtcccgagcatatgatggcacc
acttacctgccgggtattgtgggtctaaataatatcaaggccaatgactatgccaacgct
gtccttcaggctctgtctaatgttcctcctctccggaactactttctggaagaagacaac
tacaagaacatcaagcgtccccctggggacatcatgttcttgttggtccagcgttttgga
gagctgatgagaaaactctggaatcctcggaacttcaaggcacatgtctctccccatgag
atgcttcaggctgttgttctttgcagcaagaaaacttttcaaatcacaaaacaaggggat
ggggtcgacttcctctcttggttcctgaacgctctgcactcagcactgggtggcacaaaa
aagaaaaagaagactattgtgactgacgttttccaggggtccatgaggatcttcaccaaa
aagcttccccatccagatctgccagcagaagaaaaggaacagctgctccataatgatgaa
tatcaggagacgatggtggagtccacattcatgtacctgacactggacctgcctacagcc
cccctgtataaggatgagaaggagcagctcattatcccgcaggtgccgctcttcaacatc
ctggccaagttcaacggcatcaccgagaaggaatataagacatataaagagaactttctg
aagcgcttccagcttaccaagctgcctccatatttaatcttttgtattaaaagattcact
aagaacaatttttttgtggagaagaacccaacaatcgtcaactttcctattacgaacgta
gatctaagagagtacctgtctgaggaagtccaggcagtccacaagaacaccacctacgat
ctcattgccaacatcgtgcatgatggcaaaccctccgagggctcctaccggatccatgtg
ctccatcacggcacaggcaaatggtatgaattacaagacctgcaggtgaccgacatcctc
ccccagatgataacactgtctgaggcttacattcagatctggaagaggcgagataatgat
gaaaccaaccagcagggagcttga
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