Suncus etruscus (white-toothed pygmy shrew): 126024605
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Entry
126024605 CDS
T09902
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126024605 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
setr03041
]
126024605 (SNRNP200)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126024605 (SNRNP200)
Spliceosome [BR:
setr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126024605 (SNRNP200)
Complex C
U5 SnRNP specific factors
126024605 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
126024605
NCBI-ProteinID:
XP_049640994
LinkDB
All DBs
Position
12:complement(21247741..21281459)
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AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVFGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRRMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERTRRERVRQSRMDTDLETLDLDQGAEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINMDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQEKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDGQIADVARFCNRYPNIELSYEVVEKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgacggctcggagcctgcagtacgagtacaaggcgaactccaatcttgtc
cttcaagctgaccgctctctcattgaccggacccgccgcgatgagcccaccggagaggtg
ttatccctggttgggaagctggaggggactcggatgggagataaagctcaacgaaccaag
ccacagatgcaggaggaaagaagagccaagcgaagaaagcgtgatgaagaccggcatgac
atcaacaagatgaaggggtacactctgctctcagagggcattgatgagatggtgggcatc
atctataagcccaaaaccaaggagacccgggagacctatgaggtgctgctgagcttcatc
caggctgcccttggggaccagccacgtgatatcctgtgtggggctgctgatgaggttcta
gctgtcttaaagaatgagaaacttcgtgataaagaaaggcgaaaggagattgacctgctg
ttgggtcagacagatgataccagataccatgtgttagtgaacttgggcaaaaagatcaca
gactatggtggagacaaggagatccagaatatggatgacaatattgatgagacctatggt
gttaatgtgcaatttgaatctgatgaagaggaaggtgatgaagacgtgtttggagaggtc
cgagaagaggcatctgatgatgacatggaaggtgatgaggctgttgtgcgctgcaccctc
tcagctaatctcgtggcctctggagaactgatgagctccaagaagaaggacctgcaccct
cgggatatcgacgcattctggctacagcggcagctcagtcgcttctacgatgatgccatt
gtgtcccagaagaaagcagatgaagtgttggagattctgaagacagccagtgatgatcgg
gagtgtgaaaaccagctggttctcctgcttggttttaatacttttgacttcattaaagta
ttgcggcagcacaggagaatgattctgtactgtaccttgctggccagtgctcaaagtgaa
gctgaaaaagaaaggatcatgggaaagatggaagctgatccagagctttccaaatttctc
taccagctgcatgaaactgagaaagaggatcttatccgggaggagcggacccggagagaa
cgagtgcggcagtcccgaatggacacggatctggagaccttggacctggaccagggtgca
gaggcactggctcccaggcaagttctggacctggaggacctggttttcactcaaggcagc
cacttcatggcaaataagcgctgtcagcttcccgatgggtctttccggcgccagcgcaag
ggctacgaagaggtgcacgtacctgctctgaagcctaaacccttcggctcggaggaacaa
ctgcttccagtggagaagctgccaaagtatgcccaggccggctttgagggcttcaagacg
ctgaatcggattcagagtaagctctaccgtgctgccttggagacagatgagaacctgctg
ctgtgtgcgccaactggtgctggtaagaccaatgttgcgctgatgtgtatgctgcgagaa
atcgggaagcacattaacatggatggcaccatcaacatggatgactttaagatcatctac
attgcccccatgcgatctctggttcaggagatggtgggcagttttggaaagcgcctggct
acctatggaatcactgtggcagaactgacgggtgaccaccaactgtgcaaggaggagatc
agcgccactcagatcatcgtctgtacccctgagaagtgggacatcatcacccgcaagggt
ggggagcgaacctacacccagctggtgcggctcatcattctggatgagatccatcttctc
cacgatgacagagggcctgtcttggaagctttggtggccagggctatccgaaacattgaa
atgacccaagaagatgtccgactcattggtctaagcgctaccctccccaactatgaagat
gtggccacctttctacgtgttgatcctgctaagggcctcttctattttgacaacagcttt
cgcccagtgcctctggagcagacttatgtgggcatcacagagaaaaaagccatcaagaga
ttccagatcatgaatgaaatcgtctacgagaaaatcatggaacatgctgggaaaaatcag
gtgctggtatttgtccattcccgaaaggagactgggaagacggccagggccatccgggac
atgtgcttggagaaagacactctgggcctgttcctaagagagggctcagcatccacagag
gtgttgcggacagaagctgagcagtgcaagaacctggagctgaaggatcttctgccctat
ggctttgctatccatcatgcaggcatgaccagagttgatcggacgctagtggaggatctt
tttgctgataaacacattcaggtcttggtttctacagcaaccctggcttggggtgtgaat
ctccctgcacatacagtcatcatcaagggcactcaggtatacagtccagagaagggacgt
tggacggagctgggcgcactggacattctgcagatgctgggccgtgccggcagaccccag
tacgacacgaagggcgaaggcatactcatcacgtctcacggggagctccagtactacctg
tctctgctcaaccagcagctccccattgagagccagatggtgtcaaagctgcctgacatg
ctcaatgctgaaatcgtgctggggaatgtccagaatgcaaaggatgcagtaaactggctg
ggctatgcttacctgtatatacgaatgctccgatccccaacactctacggcatctctcat
gacgatctcaagggagaccctctgcttgaccagcgccgactggatctggttcatactgca
gccttgatgctggataagaacaatctggtcaaatatgacaagaagactggcaacttccag
gtgacagaactgggccgtatagccagccactactatatcaccaatgacacagtgcagacc
tacaatcagctgctcaaacccaccctgagtgagatcgaactttttcgggtcttctcattg
tcctccgagtttaagaacatcacagtgagagaggaggagaagctagagctgcagaagctg
ttagagcgagtgcccatccctgtgaaggagagcattgaagaacctagtgccaagatcaat
gtgctgctccaggcctttatctcacagctgaaattggagggcttcgctctgatggccgac
atggtctacgttacacagtcagctgggcggttgatgcgtgccatcttcgaaattgtcctc
aaccgaggctgggcacagcttacagacaagacgctgaacctctgcaagatgatcgacaag
cgcatgtggcagtccatgtgtcctctgcgccagttccggaaactccctgaggaagtcgtg
aagaaaattgagaagaaaaacttcccttttgagcgcctgtatgacctgaatcataatgaa
attggggagctgattcgtatgcccaagatggggaagaccatccacaagtacgtccatctt
ttccccaagctggagctgtcagtgcacttgcagcctatcacacgctccactctgaaggtg
gagcttaccatcacaccagacttccagtgggacgagaaggtccatggttcatctgaggcc
ttctggatcctggtggaagacgtggacagcgaggtgattctgcaccacgagtacttcctg
ctcaaggccaagtatgcccaggacgagcacctcatcacattctttgtgcccgtgtttgag
cccctgcctcctcagtacttcatccgagtggtgtctgaccgctggctttcctgtgagaca
cagctgcctgtgtccttccgacacctgatcctcccggagaagtacccacctccaacggag
ctcctggacctgcagcctttgcctgtgtctgccctgaggaacagtgcctttgagagtctc
tatcaagagaagttcccctttttcaaccccatccagactcaggtgttcaacaccgtgtac
aacagcgatgacaacgtgtttgtgggtgcccccaccggcagtgggaagaccatctgcgcg
gagttcgccatccttaggatgctgctgcagaattcggagggccgctgtgtctacatcact
cccatggaggcattggcagagcaggtttacatggactggtacgagaagttccaggacagg
ctgaacaagaaggtggtgcttctaacaggagagaccagcacagacctgaagctcctgggc
aaaggcaatatcatcatcagcacccctgagaagtgggatatcctctctcggcgttggaag
cagcgcaagaacgttcagaacatcaacctcttcgtggtggatgaggtccacctgatcgga
ggcgaaaatgggcctgtcttggaagtgatctgctctcggatgcgctacatctcctcccag
attgagcgacccattcgcattgtggcacttagctcctcactttcaaatgctaaggacgtg
gcccactggctggggtgcagtgccacctccaccttcaattttcacccgaacgtgcgccct
gtgcccttagagctgcacatccagggttttaacatcagtcacacccagactcgcctgctg
tccatggctaagcccgtgtaccacgccatcaccaagcactcccccaagaaacccgtcatc
gtgtttgtgccttcacgcaagcagacccgtctcactgcgatcgacatccttaccacttgt
gcggctgacatacagcggcagaggttcctgcactgtactgagaaggacctgatcccctac
ctggagaagcttagtgacagcactctgaaggagacgctgctcaacggggtgggctacctg
cacgaggggctcagccccatggagcggcgcctggtagagcagctcttcagctcaggggcc
atccaggtggtggtggcttctcggagtctctgctggggaatgaacgtggctgctcacctt
gtgatcatcatggacacccagtactacaatggcaagatccacgcgtacgtggactatccc
atctatgatgtgctgcagatggtgggccatgccaaccgccctctgcaagatgatgaggga
cgctgtgttatcatgtgccaaggctccaaaaaggatttcttcaaaaagttcttatatgag
ccattgccagtagagtctcaccttgaccactgtatgcatgatcacttcaatgctgaaatt
gtcaccaagaccatagagaacaaacaggatgctgtggactacctcacttggactttcctg
taccgccgcatgacacagaaccccaactactacaacttacagggcatctcgcatcgtcat
ctctcggaccacctgtcagaactggtagaacagaccctgagtgacttggagcagtccaaa
tgcattagcatcgaggacgagatggatgtggcacctctgaacctgggcatgattgctgct
tactactacatcaactacaccaccattgaactcttcagcatgtccctgaatgccaagacc
aaggtgcgaggactcatcgagattatctccaatgcagcggagtatgagaacattcccatc
cggcaccatgaggacaacctcctgcggcagttggctcagaaggtgcctcacaagctgaac
aatccaaagttcaatgacccccacgtcaagaccaacttgcttctgcaggcgcacctgtcc
cgcatgcagttgagtgcagagttgcagtcagacaccgaggaaatccttagcaaggctatc
cggctgatccaggcctgtgtagatgtcctctccagtaatgggtggctcagccctgcattg
gcagccatggagttggcccagatggtcacccaggccatgtggtccaaagactcctaccta
aaacagctgcctcacttcacctcagagcatatcaagcgttgcacagacaagggagtggag
agtgtttttgacataatggagatggaggacgaagaacggaatgcattgctacagctgagc
gatggccagatcgcagatgtggcccgcttctgtaaccgctaccccaacattgagctgtct
tatgaagtggtagagaaagatagcattcgcagtggtggccctgtagtggttctggtacag
ttggaacgagaagaggaagtcactggcccagtgattgcacctctcttcccacagaaacgt
gaagagggctggtgggtggtgattggcgatgccaagtccaacagcctcatctccatcaaa
aggctgaccctgcaacagaaggccaaggtgaagctcgacttcgtggccccagccactggg
gcccacaactacaccctgtacttcatgagtgatgcttacatgggttgtgaccaggaatac
aagttcagtgtggatgtgaaagaagcagagacagacagcgactctgattga
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integrated database retrieval system
