Suncus etruscus (white-toothed pygmy shrew): 126024707
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Entry
126024707 CDS
T09902
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04014
Ras signaling pathway
setr04015
Rap1 signaling pathway
setr04024
cAMP signaling pathway
setr04520
Adherens junction
setr04530
Tight junction
setr04670
Leukocyte transendothelial migration
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04014 Ras signaling pathway
126024707 (AFDN)
04015 Rap1 signaling pathway
126024707 (AFDN)
04024 cAMP signaling pathway
126024707 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
126024707 (AFDN)
04530 Tight junction
126024707 (AFDN)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
126024707 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_2
PDZ_2
RASSF8-10_RA
RA_3
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
126024707
NCBI-ProteinID:
XP_049641105
LinkDB
All DBs
Position
12:7717450..7813052
Genome browser
AA seq
1881 aa
AA seq
DB search
MSAGGRDEERRKLADIIRHWNANRLDLFEISQPTEDLEFHGVMRFYFQDKAAGNFATKCI
RVSSTATTQDVIETLAEKFRPDMRMLSSPRYSLYEVHVSGEERRLDIDEKPLVVQLNWNK
DDREGRFVLKNENDALPLKKAQSNGPDKQEKEGVIQNFKRTLSKKEKKEKKKRDKEVSRQ
VLEREERPFSGEDIENSRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEFRS
SDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDPADFAVAEALEKYGLEKENPREYCIAR
VTLPPGAQHSDEKGAKEAILEDDECPLQIFREWPSDKGILVFQLKRRPPDHVPRKGRKYS
EGKLVRARERAEGAGYGSALPPEKLPYLVELSPGRRNHFAYYNSHVHEDGSDSRDKPKLY
RLQLSVTEVGTEKLEDSSIQLFGSGIQPHHCDLTNMDGVVTVTPRSMEAETYVEGQRISE
TTVLQSGMKLQFGAAHVFKFVDPSQDHALTKRTVQETTFDLGGDVHGGTGLPMSKSTTRL
DSERGTSACSTAERGLVKPMIRLEQQQESHRQESRPQDAAGLELTLPASIEFRENAEDSF
LAAIINYTNSSTVHFKLSPTYVLYMACRYVLSSQYRPDVSASERPHRVIAIVSKMVSMME
SVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRITVDAQDVLAHLVQMAFK
YLVHCLQSELNNYMPAFLDDPEENNLQRPKIDDVLHTLSGAMSLLRRCRVNAALTIQLFS
QLFHFINMWLFNRLVTDPESGLCSHYWGAIIRQQLGHVEAWAEKQGLELAADCHLSRIVQ
ATTLLTMDKYAPEDIPSINSTCFKLNSLQLQALLQNYHCAPDEPFIPTDLIENVVAVAEN
TADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNLPSGLQEFLEPLCQRGFCRLI
PHTRSPGTWTIYFEGADYESHLTRENTELAQPLRKEPEIITVTLKKQNGMGLSIVAAKGA
GQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSVVTLE
VAKQGAIYHGLATLLNQPSPMMQRVADRRGSGKPRPKSEGFELYNNSAPNGSPESPQLPW
TEYSEPKKLPGEDRLMKNRADHRSSPNVANQPPSPGGKSAYAPGAAAKITSVSTGNLCSE
EQSPPPRPEAYPIPTQTYTREYFTFPASRAQDRMVPPPNQWPNYEDKGPMLSDGGDPHST
RQRVTRSQEELRDDRACGLERQTDSDLWVTQSSSMGSSASSQEHLDHSSKPGTPASTLTK
SAPGRWKTPALVPAPPVALSQPLRTDLPPPPPPPPAHYDLDGVPLDLPLPPPPGSQLGPP
PAERKKREEQQRWYEKEKARLEEERERKRREQERKLGQMRTQALHPTTAPLPPAKPEKPV
TLPRPPETVIRELQPQQQPRTIERRDLQYITISKEELASGDSLSPDPWKRDAKEKLEKQQ
QLHIVDMLSREIQELQSKAVRSAEESDRLRKLMLEWQFQKRLQESKQKDEDDEEEEEDDV
DTMLIMQRLEAERRARLQQTAMPAISVLDLLQDEERRRQQQLEEMRQREADDRARLDEER
RQQEEERGRRDAEEKRRQEEGYYSRLEAERRRQHEEAERRLLEAEEPGLCRPPLPRGYEP
AVPGPAAHPPPPPQRAASYLHTQALSPDSLYTAKFVAYNEEEEEEDCSLAGQDQSSRARK
SPGHLPPAAFKSQPRPASDGIFLSKSFQTPSASANSTAYRAGHPPPPPQKPSFFQLGHPG
GRGPNSYMGSTGTLLGAHEVHRDPREKLCRSQEAVPSGSPGAPENLPFKERQRLFSQGQD
VSDKVKASRKLMELEQELNTK
NT seq
5646 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgggcggccgcgacgaggagcggcggaagctggcggacatcatccggcactgg
aacgccaacaggctggacctgttcgagatcagccagcccaccgaggatttggagttccat
ggtgtgatgaggttttactttcaagacaaagctgctggaaactttgccaccaagtgcatc
cgagtatctagcaccgccaccacacaggatgtgattgagacgctggcggagaagttccga
ccggacatgcgcatgctctcttcgcccagatattctctctatgaggtacacgtcagtgga
gaagaaagaagattggatatagatgagaagcctctagttgtgcaattgaactggaataaa
gacgaccgagagggcagattcgttcttaagaatgagaatgatgctcttcctctcaagaag
gctcagagcaatggccctgacaaacaggagaaggaaggggtcatccagaacttcaagaga
acactctcaaagaaagagaaaaaggagaaaaagaagcgtgacaaagaggtatcacgacag
gtgttggagagagaggagaggccattctccggggaggacattgagaattcccgactggct
gctgaggtttacaaagacatgcccgagaccagctttacccgcaccatctccaacccagag
gtggttatgaagcgccggcggcagcagaagctggagaagaggatgcaggagttccggagt
tctgatgggcgaccggactcaggtgggacacttcggatttatgccgacagcctaaagccc
aatattccatacaagactatcttgctgtctaccacggaccctgcagatttcgctgtggca
gaggcactggagaaatatgggttagagaaagagaatcccagagagtactgtattgcacgg
gtcacactgcctccaggtgctcagcactcagatgagaaaggtgctaaggaagccatcctc
gaggatgacgaatgtcccttacagatctttcgggagtggcccagcgacaaagggatcctt
gtctttcagctgaagaggcggccgccagaccacgtgcctaggaagggcaggaagtacagc
gaagggaagttggtgagagcccgggagcgggccgagggcgctggctatggctcagcgctc
cctcccgagaagctgccttacctggtggagctgagcccagggaggaggaaccactttgcc
tactacaactcccacgtgcacgaagatgggtcagactccagggataagccgaagctctac
cgcctgcagctcagtgtgaccgaggttgggactgagaagctggaggacagctccatccag
ctctttggttcgggaattcagccccatcactgcgacctcaccaacatggatggtgtggtg
acagtcacaccgcgcagcatggaggctgagacgtatgtggagggacagcgcatctctgaa
actacagtcctgcagagcggcatgaagttgcagtttggggcggcgcacgtattcaagttc
gtggaccccagccaggaccatgctctcaccaaaaggactgtgcaggagacgacattcgat
cttggaggggatgtgcatggtggcacaggattgcccatgagcaagagcaccaccaggttg
gacagcgagcgtggcacgtcagcctgcagcactgccgagcgtggcctggtgaagcccatg
atccggttggagcagcaacaggagtcacatcgtcaggagagcagaccccaggacgctgct
gggctggagctaactctacctgcgagtatcgagttccgggaaaatgctgaagactcgttt
ctcgctgccattatcaactataccaatagctcgactgtgcactttaagttgtcgccgaca
tatgtgctttatatggcatgtcggtatgtactctcaagccagtatagacctgatgtcagt
gcctccgagcgtcctcacagagtgattgctattgtcagcaagatggtgagcatgatggaa
agcgtgatccaggaagtagaccaggttgatcagaagcagaagaatattgcaggggcactt
gccttctggatggcaaatgcctccgagcttctcaacttcatcaagcaggaccgagacctc
agccggatcacagtggatgcccaggacgtgcttgcccatttagtgcagatggccttcaag
tacctggtccactgccttcagtccgaattgaataactacatgccagcatttctggatgac
cctgaagagaacaatttacaaagaccgaaaattgatgatgtcttgcacacgctctcaggg
gccatgtccctgctgcgccgctgccgtgtcaatgctgccctcaccatccagctcttctcg
cagcttttccacttcatcaacatgtggctcttcaacaggctggtcaccgaccctgagtca
gggctgtgctcacactattggggggccatcatacgccagcagctgggtcatgtggaggcc
tgggccgagaagcagggtctggagctggcagccgactgtcacctcagtaggatcgtacag
gccaccaccctgctcaccatggacaagtatgcccctgaggacatccccagcatcaacagc
acctgctttaagctgaactcactgcagctgcaggccctgcttcagaattaccactgtgcg
cctgatgagcccttcattcccacggatctgatcgagaatgtggtggccgtggcagagaac
acggccgatgagctggcacgtagtgatggccgggaggtgcagctggaggaggaccctgac
ctgcagctgcctttcctcctgcccgaggatggatactcctgcgatgtggtcaggaacctt
cccagcggcctgcaggagttcctggaaccattatgccagcgtggattttgcaggttgatc
cctcacacacgttccccaggcacatggacaatatactttgaaggtgcagactatgagagc
cacctcacacgtgagaacacagaattggcccagcctctaaggaaagaaccagaaatcatt
actgtcaccctgaagaagcagaatggaatggggctcagcatcgtggcagccaagggtgca
ggtcaggataaactgggaatctatgtcaagtcggtcgtgaaaggaggtgcagctgatgtg
gacggacgtctggctgcaggtgaccagcttctcagtgtggatgggcggagcctggtagga
ctgtctcaggaaagggctgcggagctcatgaccaggaccagttctgtggtcacactggaa
gttgccaagcaaggagccatctaccacggccttgccaccctgctcaaccagccatcccct
atgatgcagagagttgcagatcgccgtggttctgggaaaccccgacctaagagtgagggc
tttgagctctacaacaactcagcacccaatgggtccccagaaagcccgcagttgccctgg
acagagtacagcgagcccaagaaactgcctggtgaggacaggctgatgaagaacagggct
gaccaccgctccagccccaatgttgcaaaccagcctcccagtcctggagggaagagcgca
tatgcccctggggcagcggccaagatcacctctgtctccactgggaacctgtgctctgag
gaacagagccctccaccccggcctgaggcctaccccatccccacacagacctacacccgg
gagtacttcaccttccctgcctctcgggcccaggaccgcatggtgcctcccccgaaccag
tggccaaactatgaggacaagggccccatgctctccgatggcggtgatccccattctaca
cgtcagcgggtgacacgctcacaggaggagctgcgggatgacagagcctgtggcctagag
cgccagactgacagtgacctatgggtcacacagagctcctcgatgggctccagcgcgtcc
agccaggaacacctggaccactcctctaagcctggcactccagcctccacgctcaccaaa
agtgccccaggccgctggaagacccctgccctggtgccagcccctcctgtggccctgtcc
cagcccctccggacagacctgcccccgccacctccaccgcctcctgcacactatgacctg
gatggggttcccctagacctgcccctcccacctccccccgggagccagctgggcccccca
ccagctgagcgcaagaagagggaggagcagcagcgctggtatgaaaaggagaaggcacgc
ctggaggaggagcgggagcggaagcggcgtgagcaggagcggaagctaggccagatgcgc
acacaagccttgcaccccaccacagcacccttgccgcctgcaaagcctgagaaaccggtg
accctgccgcggcccccagagacggtcatccgggagctgcagccccagcagcagcctcgc
acaatcgagcgccgggacctacagtacattaccatcagcaaggaggagctggcctcaggt
gacagcctgtcccccgatccctggaagcgcgacgctaaggaaaagctggagaaacagcag
cagttgcacattgtagacatgctaagccgagagattcaggaactgcagagcaaggctgtg
cgcagtgccgaagagagcgatcgcctgcgcaagcttatgctggagtggcagttccagaag
cgactgcaggagtccaaacaaaaggatgaggatgatgaggaggaagaagaggacgatgtg
gacaccatgctaatcatgcagcgcctggaggccgagcgcagagcacggctgcagcagact
gctatgccagcaatctctgttctagatttgttgcaggatgaggagcggcggcggcagcag
cagctggaagagatgcgacagcgggaagcagatgaccgtgcacggctggacgaggagcgc
cgccaacaagaagaggagcgtggccggcgtgatgctgaggaaaagaggcgacaggaagaa
gggtattacagccgcctggaagcagagaggcgccgacagcatgaggaggccgagcggcgg
ctgctggaggctgaggagcctggtctttgccgccctccactcccacggggctatgaaccc
gcggtcccaggccccgcggcccaccctcctcccccaccccaacgggctgcctcctacctc
cacacgcaggccctctcccctgactctctgtacaccgccaagttcgtggcttacaacgag
gaggaggaggaggaggactgcagtctagcaggtcaggatcagtcctcccgcgcgaggaag
tctcccgggcaccttcctccagctgcctttaagtcacagccacgcccagcctccgatggc
atctttctctccaaatccttccagaccccctcggccagtgccaacagtactgcctacaga
gcaggccatcccccgccccctccgcaaaagcccagcttcttccagcttggccaccccgga
ggtcgaggaccaaactcttacatgggctccacagggaccttgctcggtgcccatgaggtg
catcgagatcccagagagaagctgtgtagaagccaagaggcagttccatctggaagtcct
ggagcacctgaaaacttgcccttcaaagagcgccagcgtctcttctcacaaggtcaggat
gtgtcggataaagtgaaagcgtcccgaaagctgatggaactggaacaagagctgaacact
aagtga
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