Suncus etruscus (white-toothed pygmy shrew): 126025667
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Entry
126025667 CDS
T09902
Symbol
COL6A2
Name
(RefSeq) collagen alpha-2(VI) chain
KO
K06238
collagen type VI alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04151
PI3K-Akt signaling pathway
setr04510
Focal adhesion
setr04512
ECM-receptor interaction
setr04820
Cytoskeleton in muscle cells
setr04974
Protein digestion and absorption
setr05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
126025667 (COL6A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
126025667 (COL6A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
126025667 (COL6A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
126025667 (COL6A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126025667 (COL6A2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
126025667 (COL6A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
setr04147
]
126025667 (COL6A2)
00536 Glycosaminoglycan binding proteins [BR:
setr00536
]
126025667 (COL6A2)
Exosome [BR:
setr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
126025667 (COL6A2)
Glycosaminoglycan binding proteins [BR:
setr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
126025667 (COL6A2)
Hyaluronan
Extracellular matrix or blood plasma proteins
126025667 (COL6A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Motif
Other DBs
NCBI-GeneID:
126025667
NCBI-ProteinID:
XP_049641417
LinkDB
All DBs
Position
13:99094769..99111053
Genome browser
AA seq
1020 aa
AA seq
DB search
MLRDLSSALLLWGLLGFVRAQFQEVLSPDSAVERGTNCPEKAHCPVYVYFVLDTSESVAM
QPPTDRLMQHMQDFVVELTSQLQDQLYLGQVALSWRMGGLHFSDEVQEFSPPDSDRAAFV
SSLKGIVSFRRGTFTDCALANMTRNVQPVLGKGAVVFAVVITDGHVTGSPCGGLKLQAER
ARDQGVRLFAVAPSQRLYEQGLRDVASAPHELYRNGYATMLRDSAEMDQATIERIIKVMK
HEAYGECYKVSCLEIPGAPGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGPIGFPGP
KGVPGLKGEKGEFGADGRKGASGLAGKNGTDGQKGKLGRIGPPGCKGDPGSRGPDGYPGE
AGSPGEQGDQGAKGDPGRPGRRGPPGDSGDKGSKGYPGNSGAPGSPGVKGAKGGPGPRGP
RGEPGRRGDPGPKGGPGSAGPKGEKGDPGPEGARGLAGEVGNKGSKGDRGLPGPRGPQGA
LGEPGKQGSRGDVGDPGPRGDSGPPGPKGDPGRPGFSYPGPRGEPGDKGEPGPRGPEGGR
GDFGLKGESGRKGEKGEPADPGPPGEPGTRGPRGPPGSEGEPGPPGDPGLTECDVMTYVR
ETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPKSETGTR
VGVVQYSHEGTFEAIQLDDPRIDSLSSFKEAVRNLEWIAGGTWTPSALKFAHDRLIKESR
RQKTRVFAVVITDGRHDPRDDDLHLQALCSGDVTVTAIGIGDMFHEKHESESLSSIACNR
PQQVRNMTLFSDLVAERFIDDMEDVLCPDPQIVCPDLPCQAELYVAQCTQRPVDIVFLLD
GSERLGERNFRKALQLVEATSRRLTLARGDDDPLNARLALLQFGAAGEQQVAFPLTSNLT
RVQEALDTARYLDSASHVGAGIVHAVNHVAQRGRGGARRHAELSFVFLTDGVTGNLSLDE
ALHSMRKENVVPTVVAVGGDVDNDVLAKLTLGDSAAVFREKDYDSLVQPSFLDRFIRWLC
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgctcagagacctgagctccgccctcctgctctgggggctcctgggttttgtccgtgct
cagtttcaagaggtgctctcaccagacagtgccgtggagaggggcaccaactgcccagag
aaggcgcactgcccggtgtacgtgtacttcgtgctggacacgtcggagagcgtggccatg
cagccgcccaccgaccgcctgatgcagcacatgcaggacttcgtggtggagctgacgagc
cagctgcaggaccagctgtacctgggccaggtggcgctgagctggcgcatgggggggctg
cacttctccgacgaggtgcaggagttcagcccgccggacagcgaccgcgcggccttcgtc
agcagcctgaagggcatcgtgtccttccggcgcggcaccttcaccgactgcgccctggcc
aacatgacccgcaacgtgcagcccgtgctgggcaagggcgccgtggtcttcgccgtggtc
atcaccgacggccacgtcaccggcagcccgtgcggcggcctcaagctgcaggccgagcgc
gcccgcgaccagggcgtccgcctcttcgccgtggcccccagccagcggctgtacgagcag
ggcctgcgcgacgtggccagcgccccgcacgagctgtaccgcaacggctacgccaccatg
cttcgggactccgccgagatggaccaggccaccatcgagcgcatcatcaaggtcatgaaa
cacgaagcctatggcgagtgctacaaagtgagctgtttggagattccgggggcgcctggc
cccaagggctaccgcggacaaaagggtgccaagggcaacatgggtgagccgggtgagcct
ggacagaagggacgacagggagacccaggcatcgagggtcccattggattccccgggccc
aagggggttccaggcctcaaaggagagaagggtgaattcggagctgatgggcgaaagggc
gcctccggcctggccggcaagaacgggaccgacggacagaagggcaagctgggacgaata
ggacctcctggctgtaagggagaccctgggagcaggggccccgacggctaccctggagaa
gcaggaagtcctggggagcaaggggaccaaggtgccaagggggaccccggccgccctgga
cgcagaggaccaccgggagacagtggggacaaaggaagcaagggttacccgggcaacagt
ggtgcccccggcagtccgggcgtgaagggagccaaaggcgggcctgggccccgaggaccc
cgcggcgagcctggccgcagaggagaccccgggcccaagggcggcccaggcagcgctggt
cccaaaggggagaagggtgacccagggcctgagggcgcccgcgggctggctggagaagtg
ggcaacaaaggatctaagggggaccgtggcctgcctggacccagaggaccccaaggagcc
ctgggggagcccgggaagcagggatctcgaggagacgttggggatccaggtccccgtggg
gactcagggccgcctggccccaagggagacccgggcaggcccggattcagctatcctgga
ccacggggagagcctggtgacaaaggcgaacctggtccccgaggtcctgagggcggcaga
ggagacttcgggctcaaaggagaaagcgggaggaagggcgagaagggcgagccggcggac
cctggacccccgggggaacctggcacccgaggcccgagaggacctccagggtctgaggga
gagcctgggcctcccggagaccccggcctcacggagtgtgatgtcatgacctacgtacgg
gagacgtgcggctgctgcgactgcgagaagcgctgcggagccctggacgtggtgttcgtc
atcgacagctctgagagcatcggctacaccaacttcacgctggagaagaacttcgtcatc
aacgtggtcaaccggctgggcgccatcgccaaggaccccaagtctgagacaggcacccgg
gtgggtgtggtgcagtacagccacgagggcaccttcgaggccatccagctggacgacccg
cgcatcgactcgctgtctagcttcaaggaggccgtgcgcaacctcgagtggatcgcgggg
ggcacttggacgccgtcggcgctcaagttcgcccacgaccggctcatcaaggagagccgg
cggcagaagacgcgcgtgttcgccgtggtcatcaccgacggccggcacgacccccgggac
gacgacctgcacttgcaggccctgtgcagcggcgacgtgacggtcacggccatcggcatc
ggggacatgttccacgagaagcacgagagcgagagcctgtcgtccatcgcctgcaaccgg
ccgcagcaggtgcgcaatatgacgctcttctccgacctggtggccgagcgcttcatcgac
gacatggaggacgtgctgtgcccagacccccagatcgtgtgcccggacctcccctgccaa
gcagaactgtacgtggcccagtgcacgcagcggccggtggacatcgtcttcctgctggac
ggctcggagcggctgggcgagcggaacttccgcaaggccctgcagctggtggaggccacg
tcgaggcggctgacgctggcccgcggggacgacgaccccctgaatgcccgcctggcgctg
ctgcagttcggggcagcgggcgagcagcaggtggccttcccgctgacatccaatctgacc
cgggtgcaagaggccctggacactgcgcgctacctggactcggcctcgcatgtgggcgct
ggcatcgtgcacgccgtcaaccacgtggcccagcggggccgtggaggtgcccggagacac
gccgagctgtccttcgtcttcctcaccgacggcgtcaccggcaacctcagcctggacgag
gcgttgcactccatgcgcaaggagaatgtggtgcccaccgtggtggccgtgggcggagac
gtggacaacgacgtgctggccaaactgaccctgggcgactctgctgccgttttccgcgag
aaggactacgacagcctggtgcagcccagtttcttggacaggttcatccgctggctctgc
tag
DBGET
integrated database retrieval system
