Suncus etruscus (white-toothed pygmy shrew): 126025931
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Entry
126025931 CDS
T09902
Name
(RefSeq) collagen alpha-1(VIII) chain
KO
K23455
collagen type VIII alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
126025931
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
Motif
Other DBs
NCBI-GeneID:
126025931
NCBI-ProteinID:
XP_049641604
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Position
13:81065110..81231201
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AA seq
741 aa
AA seq
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MAVLSAPSKLLGVLLTFSLGFIRLVQSGAYYGIKPLPPQLPPQIPQYQPLGQQVPHLPLG
TDGLSMGKEMPHMQYGKEYPHLSPYRKEMQPMPRMGKEMAPKKGKAEIPVASLRGEQGPR
GEPGPRGPPGPPGLPGHGIPGTKGKPGPQGYPGIGKPGMPGMPGKPGTMGMPGAKGEIGP
KGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGVKGERGPKGPPGPPGLQGPKGER
GFGMPGLPGLKGPPGVHGPPGPVGLPGVGKPGVIGFPGPQGPLGKPGPPGEPGPQGPIGV
PGVQGPPGMPGIGKPGQDGLPGQPGFPGGKGEQGLPGLPGPPGIPGIGKPGFPGPKGDKG
IGGLPGPLGPRGEKGPVGPPGIGGPPGEPGLPGLPGPMGPPGAIGFPGPKGEGGIVGPQG
PPGVKGEPGLQGFPGKPGFLGEVGAPGMRGLPGPLGPKGEAGHKGLPGLPGAPGLLGPKG
EPGIPGDQGLQGPPGIPGIAGPSGPIGPPGIPGPKGEPGLPGPPGFPGVGKPGVAGLHGP
PGKPGALGPQGQPGLPGPPGPPGPPGPPAAMPPTPSAHGEYLPGVGLGIDGLKPPDAYGA
KKGKNGGPAYEMPAFTAELTAPFPPVGAPIKFDKLLYNGRQNYNPQTGIFTCEVPGVYYF
AYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMPSEQA
AGLYAGQYVHSSFSGYLLYPM
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgctgtctgctccttcgaagttgctgggagtgctcctgaccttttccttaggc
ttcatcaggcttgttcagtcgggtgcttactatgggatcaagccgctgccacctcagctc
ccaccacaaattccacaataccagcccctgggccagcaagtacctcacctgcctttgggc
acagatggccttagcatgggcaaggagatgcctcacatgcagtatggcaaagagtatcct
catctatccccatacaggaaggaaatgcagccaatgccaagaatgggcaaggaaatggca
cccaagaaaggcaaagcggaaataccagtagccagtttacgaggagaacaaggtccccga
ggagagcctggcccaagaggaccacctgggcctccaggtttacctggtcatgggattcct
ggaaccaaaggaaaaccggggccacagggatatccaggaattgggaaacccggtatgcct
gggatgcctggaaagccgggcaccatgggaatgcctggggcaaaaggtgaaatcggaccc
aaaggggagattggacccatgggcataccaggcccacagggacctccaggccctcatggg
cttccaggcattgggaagccaggtgggccaggattaccagggcagccaggtgtcaagggt
gagcgaggacccaaaggacccccaggccctccaggtctccagggtcctaaaggagaaagg
ggtttcgggatgcccggtttgcccggcctgaaggggcctccaggggtgcacggcccccct
ggccccgtgggccttccaggggtgggtaaaccgggagtgataggcttccctggtccccaa
ggtcccctgggaaagccaggtccaccgggtgaacctgggccacaaggccctataggggtg
ccaggagttcaaggccctcctgggatgcctggaattggaaaaccaggccaggatgggctc
cctgggcagccaggatttcctgggggcaaaggggagcaagggctacctgggttgccagga
cctccaggcattcccgggattgggaaaccaggcttcccaggtcccaaaggtgacaagggc
ataggggggctgccagggcctcttgggcccagaggggagaaaggacccgtaggcccccct
ggaatagggggtcctccaggagagccaggattgcctggactgccaggccccatgggccct
ccaggcgctatcggttttccaggacccaaaggagaaggagggattgtagggccccagggg
ccaccaggagtcaagggggagcccggacttcaaggcttcccagggaagccaggtttcctg
ggagaagtgggggccccaggcatgagaggattgccaggccccttagggcccaagggagaa
gctggacacaaaggtttgcccgggctccccggggctccaggtcttcttggaccaaaggga
gagccaggaatcccaggagatcaaggattacagggccccccaggcatcccaggcatcgca
ggccctagtggccccattgggcctcctggaattccaggtcccaaaggggaaccaggcctc
cctggaccccctgggttcccaggtgtagggaagccaggagtggcaggtctgcacggcccc
cctgggaagccaggagctcttgggcctcaaggccagcctggccttcctgggcccccagga
cctccaggccccccaggtcccccagctgcgatgcccccaacaccatcggcccacggagaa
tatctgccaggtgtggggctgggaattgatggattgaagccccctgatgcctatggagct
aagaaaggcaagaatggaggccctgcctatgagatgcccgcattcaccgcggagctcaca
gctcccttcccacctgttggggcacccatcaagtttgacaaactgctctataatggcaga
cagaactacaacccacagacgggcatcttcacctgcgaggtccctggggtctactacttc
gcctaccacgtccactgcaaggggggcaacgtgtgggtggccctgttcaagaacaacgag
cctgtgatgtacacatatgacgagtacaagaaaggctttctggaccaggcctcgggaagt
gccgtgttgttgctcagacccggagaccgcgtgttcctccagatgccctcggaacaagct
gcagggctgtacgccgggcagtatgtccactcctccttttcaggatatttattgtatccc
atgtaa
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