Suncus etruscus (white-toothed pygmy shrew): 126026031
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Entry
126026031 CDS
T09902
Symbol
LTN1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
setr03009
]
126026031 (LTN1)
04121 Ubiquitin system [BR:
setr04121
]
126026031 (LTN1)
Enzymes [BR:
setr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126026031 (LTN1)
Ribosome biogenesis [BR:
setr03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
126026031 (LTN1)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126026031 (LTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
FANCL_C
zf-ANAPC11
zf-rbx1
RINGv
zf-RING-like
zf-RING_16
HipN
Motif
Other DBs
NCBI-GeneID:
126026031
NCBI-ProteinID:
XP_049641695
LinkDB
All DBs
Position
13:48041791..48104295
Genome browser
AA seq
1765 aa
AA seq
DB search
MGGKNKQRTKGNLRPSNSGRAAELLAKEKGTVPGFIGFGTSQSELGYVPAIQGAEEIDSL
VDSDFRMVLRKLSKKDVTTKLKAMQEFGAMCTERDTDIVKGVLPYWPRIFCKISLDPDRR
VREATQQAFEKLILKVKKQLAPYLKSVMGYWLMAQCDTYSPAASAAREAFEAAFPPSKQS
EAIAFCKDEIASILQDHLIKETPDTLSDPQTVPEEERKAKFYRVVTCSLLAIKKMLCLLP
DSELELLEEKIKSLLSQNKFWKYGKHSVPQIRSAYFELISAFCQRIPQLMKEEASKVSPS
VLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSAVVREGGRGLASVIY
PYLLPFISKLPQTITEPKLDFFKSFLTCLVTGLSTEKIKTSISECSAVISAFFECLRFIM
QQNLGEDEIEEMLINDQLIPFIDSVLQDPKLQDEELFDHLADTLGSWEAKADTEKDDIMA
QNLEKVLLRFWKKLSDICVEKIDEPEADVKSVVGVSNLLQVLQKPKSSLKSNKRKACKVR
FADEVTENIPDNEKLELSEAQNSEVSELKAEPSFVNSSANHLSPLRQRPLEDLVCKLAEM
SMNYVNKHKSKQHLRFLSTLLNSFSSTKVFKMLLNDEKHGTIKTKPLEIVKLMQKNPAVQ
FLYQKLIGWLNEDQRKDAGFLVDILYSALHCCDNNLERKTILDDLTEVELKWNSILQVVE
KACSSSDKHALVTPWLKGDILGEKLVTLADELCTKDSESPVSADSYFLERWALLNLLLSQ
HVTNDYLIREVYVERIIVKLHGTLVKAKKLSEVENKDSPVSFICDVIYNYFSSAEGCALK
LSSEDLLLTLFQLCAESKDKTRLPDFLICKLRNTWLAGVNLLIHQPGNTYKQSSFLRLSA
LWLKNQVESCSLDIRSLQVLLSTVEDLLSAFLESEDTSLLGIYIGNVMPSSSEWEKMRHS
LPMQWLHSPLLEGRLSLNYECFNTVSEEDTKKLPSHLCTSALLSKMLLVALKKEVILENN
ELEKIIAELLYSLQWYEELDDPPIFLTGYYEMLQKLGITYDNLCGLGKTSGLLQLLFNRS
MENGTLWSLIIAKLILSQSISSDEVKQHYKRKESFFPLTEGKMHTIQSLCPFLSKEDKKE
FIAQCIPALLSWTKEDLWSTNGGFGHLAIFNSCLKTRSIDDGELLNGILKILITWKKDHE
DVFLFSCNLSEVSPEILGVNIEIMRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTNEN
QALYCVPLVQLFACVSCDLACELSAFFDSMTPETAGNLPANLISEWKEFFSLGIHSLLLP
LLVTVTGENKDTSETAFSNAVLKPMCETLTYIPKDQLLNHKLPARLVAGQGPNLPENLQT
LLNTLAPLLLSRARPVQIAAYHMLYKLMPELPQYDQDNLKSYGDEEEEPALSPPAVLMSL
LSTQEDLLENVLGCVPVGQIVNIKPLSEDFCYVLGYLLTWKLILTFFKAASSQLRALYSM
YLRKTKSLNKLLYHLFRLMPENPTYTETAVEPSNKDPKTFFTEDLHLSIRETATLPYHIP
HLACSVYHMTLKDLPAMVRLWWNSSEKRVFNIVDRFTSKYVSNVLSFQEISSVQTSTQLF
NGMTVKARATTREVMATYSIEDIVIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWML
QLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKF
HSACLYKWFTSSNKSTCPLCRETFF
NT seq
5298 nt
NT seq
+upstream
nt +downstream
nt
atgggcgggaagaacaagcagcggacgaaggggaacctgaggccttcaaacagtggccgg
gctgcagaactcttagccaaagaaaagggaaccgtgccgggatttattggatttgggaca
tctcagagtgaactaggctatgttcctgccatccaaggagctgaagaaatagacagtctt
gttgattctgacttccgaatggtactacggaaactttcgaagaaagatgtcaccacaaaa
ttaaaagctatgcaggaatttggagctatgtgtacagaaagagacacagacattgtaaaa
ggagtccttccctactggccaagaattttctgtaaaatttcacttgatcctgaccgccgg
gtacgagaagccacacagcaagcttttgagaaactgatccttaaagtgaagaagcagctg
gccccctatttaaaaagtgtgatgggctactggttgatggctcagtgtgacacatactcc
ccagctgcttctgctgccagagaagcttttgaagctgccttccctcctagcaagcagtct
gaggcaatcgcgttttgtaaggatgaaatcgcaagtatactacaagatcatcttataaaa
gaaactcctgatactcttagtgacccacaaactgttccagaggaagaaagaaaagcgaaa
ttttatcgtgttgtaacttgttccttattggccataaagaaaatgctgtgcctgctacct
gacagtgagctagaattgcttgaagagaaaattaagtcacttttatcacagaataagttt
tggaaatatggaaaacacagtgtacctcagattcgctcagcttattttgagttaatttct
gctttttgccaacggattccacaactgatgaaggaggaggcatccaaagtcagcccatct
gttcttcttagcatcgatgacagtgaccccatcgtgtgcccagctctctgggaagctgtt
ctttatacgcttacaactattgaggattgttggcttcatgtaaatgcaaaaaaaagtgtg
tttcccaagctgtcagctgttgttcgtgaaggtggccggggtcttgcttctgtcatatac
ccttatcttctgccgtttatcagcaaactccctcagaccatcacagagccaaagttggat
ttcttcaaaagttttctcacctgcctagtgaccgggctttcaacagagaaaatcaaaacc
agcatttcagagtgctcagcagtaatatctgccttttttgaatgcttacgttttataatg
caacagaacttaggtgaggatgagattgaagagatgctcatcaatgaccagttgatccct
tttatcgattcggttctccaagaccccaaattgcaagatgaagagctatttgatcattta
gcagacactttaggctcctgggaagccaaggcagatacagaaaaagatgatatcatggct
caaaacttggagaaagtgctactaagattctggaaaaagctatccgatatctgtgttgag
aaaattgatgagcccgaagcggatgtgaagtctgttgtgggtgtatctaacctattacag
gttcttcagaagccaaaaagctcattgaagtccaataaaagaaaagcttgtaaggttagg
tttgctgatgaagtgacggaaaatattccagacaatgaaaaacttgaattatctgaagca
cagaacagtgaagtctctgaattaaaagctgaaccttcttttgttaatagctctgcaaat
catctctctccactgaggcaaaggcctttagaagatttagtttgtaagctggcagagatg
agtatgaattatgtcaacaaacacaaatcaaagcaacatctgaggtttctgtctactctg
ctgaactccttctcttcaactaaagtgtttaagatgctgctaaatgatgaaaaacatggt
actatcaagacaaagcctctcgaaatagtcaaacttatgcaaaagaatcccgcggtgcag
tttttataccagaaactaataggttggctgaatgaagaccaaaggaaggatgccggcttc
ttggtggatattttgtatagtgccctccattgctgtgacaataatttggagagaaaaact
atcttggacgatctaactgaggtggagctgaagtggaattctattcttcaagttgttgaa
aaggcatgctctagttcagataaacatgcattagtgactccttggctcaaaggagatatc
cttggagagaaactggtaaccttggccgatgaactttgtactaaggactctgaatcccca
gtatctgcggactcttacttcttggaaagatgggctctgctaaacttgttgttatcccag
catgttacgaatgattatttgattcgagaagtgtatgttgaaagaattattgttaaactt
catggaactttagtcaaagctaagaaattgtcagaagttgaaaataaggattcacccgtc
tctttcatctgtgatgtgatctataactatttcagctcagcagaaggatgtgcactaaaa
ctatcatccgaagatttattattaactctctttcagttatgtgctgagagcaaagataaa
acacgtttgccagacttccttatatgcaaactgagaaacacttggctcgctggtgtgaac
ctattgatccatcagcctggcaatacatacaaacaaagttccttcctacgtttatctgcg
ctgtggttgaagaaccaagtggagtcttgctctttggatatcagaagccttcaggttctt
ttatccactgtggaggatttgctaagtgcatttctagagagcgaagatacctcccttttg
ggaatttatatcggaaatgtaatgccaagcagcagtgagtgggaaaagatgaggcactcc
cttcctatgcagtggttgcatagccctctcttagaaggaagattgagtttgaattatgag
tgtttcaatactgtttctgaagaagatacaaagaaacttcccagccacttgtgtacttct
gcattactgagcaaaatgttactagttgcattgaaaaaggaagtcattctagaaaataat
gagcttgagaaaataattgcagaactgctctattcactgcagtggtacgaagaattagat
gacccacctatttttctaactgggtattatgaaatgcttcaaaaattgggtattacatat
gataacttgtgtggacttggcaagacttctggcctcttacagttgttgtttaacaggtcc
atggaaaatggcaccctttggtctctcataattgctaagttgatcctttctcaaagtatt
tcatctgatgaagtaaaacagcattataagagaaaagaaagttttttcccactaacagaa
ggtaaaatgcataccattcaaagtctctgtccatttttgtcaaaggaagacaagaaagaa
ttcattgctcagtgtatacctgcccttttgtcctggacgaaagaggatctttggagcacc
aatggaggttttggacatcttgctattttcaattcctgcctgaaaaccagaagcatagat
gatggagaattattgaatggcatattaaaaattctaataacttggaagaaagatcatgag
gatgtctttcttttcagttgtaatctctcagaagtaagtccagagatactgggtgtaaat
atagaaataatgcggttcctttccctgtttctgaaatactgctcatctcctttggcagaa
agtgaatgggacttcatcatgtgctccatgctggcttggttggagacgacaaatgagaac
caagcactgtactgtgttccacttgtccagctgtttgcctgtgtcagctgtgacttggcc
tgtgagctcagtgctttctttgactccatgactccagagactgctggcaaccttcctgca
aatctaatcagtgaatggaaagaatttttttccctaggcatccacagtttgcttttacct
cttttggtgactgttacaggagaaaacaaagacacatctgaaacggccttttcgaatgca
gtattgaagcccatgtgtgaaactttaacctacatccccaaggatcaactgttgaatcac
aaactccctgccagattggttgctggccaaggaccaaacctaccagaaaatctccagact
ctgttaaatactttagccccattactcctctccagagctcggcctgtgcaaattgctgct
taccacatgctctacaaattaatgcctgaattgccacagtatgatcaggataatttaaag
tcatatggagatgaagaagaagaaccagccctgtctccaccagccgtgctgatgtctctt
cttagcactcaagaggacttactagaaaatgtgttgggatgtgttcctgttggacagatt
gttaatatcaaaccgctgagcgaagacttctgttatgtcctgggatacctcctcacttgg
aaattaatactcactttcttcaaagctgcttcttcccagcttcgggccctgtattcaatg
taccttcggaaaacaaagagtttgaataaattgctttatcacctcttcagacttatgccg
gaaaatccaacctacacagagacagccgttgagccctcaaacaaagacccgaagaccttc
tttaccgaagacctccatctgagtattagagaaacagcaacactaccataccatattccg
cacttggcatgttcagtctatcatatgacattaaaggacttgcctgccatggtcaggttg
tggtggaatagtagtgagaagcgcgttttcaatattgtagacagatttaccagcaaatat
gtcagcaatgttctttcttttcaagaaatatcttctgtacaaacaagcactcaactgttt
aatggcatgacggtgaaggctcgagccactactcgagaagtaatggccacttactccatt
gaggatatagtcatcgaacttataatccagttgccatcaaattacccgctgggttccatc
actgtggagagtgggaagagagtcggggtggccgtgcagcagtggcgaaactggatgctg
cagctgagcacatacctcacccaccagaatggaagtattatggaaggcttagcattatgg
aaaaataatgtggacaaacgttttgagggtgttgaagactgtatgatttgtttctcagtc
attcatggttttaactattcccttcccaaaaaagcgtgtagaacatgcaagaaaaagttt
cattctgcatgcttgtacaaatggtttacatccagcaacaaatccacttgtccactctgt
cgtgagacctttttctga
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integrated database retrieval system
