Suncus etruscus (white-toothed pygmy shrew): 126027138
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Entry
126027138 CDS
T09902
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126027138 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126027138 (CNOT1)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126027138 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126027138 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
126027138
NCBI-ProteinID:
XP_049642070
LinkDB
All DBs
Position
14:complement(52602693..52724227)
Genome browser
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECATLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASIEECRNIIMQFGVREITAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHSVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGTGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQIPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRAASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPALAMNPQAQALRNLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKGLQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVDLLVRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVTHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVIRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcgcatgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcagtttctgattcaggagtgtgcaaca
ttgattacaaagccaaattttatctcaacgctgtcctatgccattgataatcctttgcac
tatcagaagagtttaaagcctgcaccccacttgtttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaggtgatatttggccttgccctcttgaattcttccagctcagat
ctcagaggttttgctgctcagtttatcaaacagaagcttccagatcttctgcgttcttac
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtc
ctacaccttctcctctcccatcttctctttgggcagaagggagcctttggagttggacag
gaacagatagacgctttcctaaagacactgcgcagagattttcctcaggaacgctgtccc
gtggtgcttgcaccacttttatatcctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagcaaaaaccatgatggagagttccttggctgattttatgcaa
gaagtaggatatggcttttgtgcaagtattgaagaatgtcgcaatataatcatgcagttt
ggcgttcgggagatcacagctgcccaggttgcaagagttttgggaatgatggctcggact
cattcaggacttacagatggcattccactacagagtatctcagctcctggcagtgggatc
tggagtgatggtaaagataaaagtgatggtgcacaggcacacacatggaatgtggaagtt
ttgattgatgttctcaaagaactgaacccgagtttgaatttcaaggaagtaacttatgaa
ctggaccatcctggatttcaaattcgtgatagtaaaggacttcataatgttgtttatggc
attcagaggggtctgggaatggaagtattcccagttgacctcatatacaggccttggaaa
catgcagaaggccagctatccttcattcagcattccctaataaatccagagatcttttgt
tttgctgactatccctgtcattctgttgccactgatattctgaaagcaccaccagaggac
gacaatcgagaaattgccacatggaagagcttggatttgattgaatctctcttgaggctt
gcagaggtggggcaatatgagcaagtcaaacaactcttcagcttccctattaaacactgt
ccggacatgctagtattggccttactacaaatcaacacctcctggcacaccttgcgccat
gagctcatctccactctgatgccaatttttcttggaaatcaccctaactcagctattatt
ttgcactatgcatggcacggacagggacagtctccctcaatccgccaacttattatgcat
gcaatggcagaatggtacatgcgtggggagcagtatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggctttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttctcgtcgtgaatacctcaaacttgacaagtgg
ctcacagataaaattcgagagcatggagagccttttatccaggcatgcatgactttttta
aagcgacggtgcccttctattttgggtggacttgccccagagaaagatcaaccgaaaagt
gctcaacttcctccagaaacgctggcgacaatgttggcatgtttacaagcttgtgctggg
agtgtttctcaggagttatcagaaaccattctcaccatggtagccaattgtagtaatgtt
atgaacaaggcaagacagccaccacctggagttatgccaaaaggccgtcctcccagtgct
agtagtttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagcagctcctcacacccagagtatgcagggcttccctccaaatttg
ggttctgcattcagtacccctcagtcaccagcaaaagcatttccacccctttcaacccca
aatcagacgactgcattcagtggtattggaggactttcttcacagcttccagtaggtggt
cttggcacaggcagcctgactggtataggaactggggcccttggactccctgcagtgaat
aacgatccttttgtacagaggaaactgggcacctctggactgaatcagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtgtggccagaggcaaaccagcacttt
agtaaagagatagatgatgaagcaaacagctatttccagagaatatataatcacccacca
catccaaccatgtctgttgatgaggtattagaaatgttgcagaggtttaaagattctact
ataaaaagggaacgagaagtatttaactgtatgctaaggaatttatttgaagaatatcgt
tttttcccccagtatcctgataaagaattacatataacagcctgcctttttgggggaata
atcgaaaaaggactggttacttacatggcactgggcctcgccctgcgatatgttcttgaa
gccttacgcaagccttttggatccaaaatgtattattttggtattgctgcactagataga
tttaaaaatagattgaaggattacccccagtattgtcagcacttggcttctatcagtcac
tttatgcaatttccacatcatttgcaggagtatatcgaatatggacagcaatctagagat
cctcctgtgaaaatgcagggctctatcacaacccctggaagtattgcactggctcaggct
caggcccaggcccagattccagcaaaagctccccttgctggtcaggttagcactatggta
actacttcaacaaccaccactgttgctaaaacggttacagtcaccaggccaaccggagtc
agctttaagaaagatgtgccaccttctattaatactacaaatatagatacgttgcttgtg
gccacagatcaaactgaaaggattgtagagcccccagaaaatatccaagagaaaattgct
tttatcttcaacaatctttcacagtcaaatatgacacaaaaggtcgaagaactaaaggaa
actgtgaaggaagaatttatgccttgggtttcacaatacctagttatgaagagagtcagt
attgagccaaattttcacagcctgtactcaaacttccttgataccctgaaaaatcctgaa
tttaacaagatggttctgaatgaaacctacagaaacattaaagttctacttacctctgat
aaagctgcagccaatttctcagatcgctccttgttaaagaacttgggacattggcttgga
atgattacattagctaaaaataaacccatcctgcacactgacttggatgtaaaatctttg
ctgctagaggcttatgttaaaggacaacaagaattactctatgtagtgccctttgttgcc
aaagtcttagagtctagcattcggagtgtggtttttaggccacccaacccctggacaatg
gcaattatgaatgtattagctgaattacatcaggaacatgacttaaagttaaacttgaag
tttgaaattgaggtcctctgcaagaaccttgcattagatatcaatgagctaaaacctgga
aacctactgaaggataaagatcgtcttaaaaatttagatgaacaactctctgctccaaag
aaagatgtcaagcagccagaagaactgcctcccattacgaccacaacaacttctacaaca
ccagctaccagtaccacctgtactgccactgttccaccacagccacagtatagctaccat
gacatcaatgtttattctcttgctggcctggcaccacacattactctaaacccaacaatt
cccttgtttcaggcacatccacagttaaagcaatgtgtacgccaagcaattgaacgcgca
gttcaggagctggttcatcctgtggtagatcgttctattaagatcgccatgactacttgc
gagcagatagtcagaaaagattttgcccttgattctgaggagtctcgaatgagaatagca
gctcatcacatgatgcgcaacttgacagctggaatggcgatgattacgtgcagggaacct
ttgctcatgagcatatctacaaacttgaaaaatagttttgcctcagcccttcgagctgca
tctccacaacagagagaaatgatggatcaggcagctgctcagttagctcaggataattgt
gaattggcttgctgttttattcagaaaactgcagtggagaaagcaggccctgagatggat
aagagattagcaactgaatttgagctgagaaaacacgctaggcaagaagggcgaaggtac
tgcgatccagttgtactaacataccaagctgaacgaatgccagagcaaatcaggctgaaa
gttggtggtgtagacccaaagcagttggctgtttatgaagaatttgcacgtaatgtgcct
ggcttcttgcctacaaatgatttaagtcaacccacaggatttttagctcagcccatgaag
caagcttgggcaacggatgatgtagctcagatttatgataagtgcattacagaactggag
cagcacttacacgctattccaccagctctggccatgaatcctcaagctcaggctctcaga
aatcttttggaggttgtagtattatctcgaaactctcgggatgccattgctgctcttgga
ttgctccagaaggctgtagagggtttattagatgccacgagtggtgctgatgctgaccta
ctgttgcgttatagagagtgccacctcttggtgctaaaaggtcttcaagatggccgagca
tatggatctccctggtgtaataaacagatcacaaggtgcctaattgagtgtcgggatgag
tataaatacaatgtggaggctgtggatttactagttcgcaatcacttggttaatatgcag
caatatgatcttcatctagctcagtcaatggagaatggtttaaactacatggcggtggca
tttgctatgcaattagtaaaaatcttgctggtggatgaaagaagtgtcacccatgttact
gaggcagatctgttccacaccattgagaccctcatgaggattaatgctcactccagaggc
aatgctccagaaggattacctcagctgatggaagtaatacgatccaattatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gagtatgatgatcctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcatcagcaaggaatcctgaagactgatgac
ctcataacaaggttctttcgtctgtgtactgaaatgtgtgttgaaatcagttaccgtgct
caggcagagcagcagcacaatcctgctgctaatcccaccatgatccgagccaaatgctat
cacaacctggatgcctttgtcagactcattgcactactagtaaagcactcaggggaagcc
accaacactgtcaccaagataaatctgctgaacaaggtccttggtatagtagtgggagtt
ctcctgcaggatcatgatgttcggcaaagtgaatttcagcaacttccctatcaccgaata
tttataatgctgctcttggaactcaatgcacctgagcatgtattggaaacgattaatttc
cagacacttacagctttctgcaatacattccacatcttgaggcctaccaaagctcctggc
tttgtgtatgcctggcttgaactgatctcccatcggatatttattgcaagaatgctggca
catacgccacagcagaagggatggcctatgtatgcacagctactgattgacttattcaaa
tatttagcacctttccttagaaatgtggaactcaccaaacctatgcaaatcctctataag
ggcactttaagagtgctgctggttcttttgcatgatttccctgagttcctttgtgattac
cattacggtttctgtgatgtgattccacctaactgtatccagctaagaaatctcatcctg
agtgccttcccaagaaacatgaggctcccagacccattcactcccaatttgaaggtggat
atgttgagtgaaattaacatcgcaccccgaattctcaccaattttactggagtgatgcca
cctcaattcaaaaaggatttggattcctatcttaaaactcgatcaccagttacttttctg
tctgatctgcgcagcaacctacaggtatccaacgagcctggaaatcgctataacctccag
ctcatcaatgcactggtgctctatgtagggactcaggccattgcacacattcataacaag
ggcagtacaccttccatgagcacgattacccactctgctcacatggacatcttccagaac
ctggctgtggacttagacactgaaggccgatacctcttcttgaatgcaattgcaaatcag
ctacggtacccaaatagccacactcactattttagctgcacaatgctctacctttttgca
gaggccaatactgaagctattcaagaacagatcacaagggttctcttggaacggttgatt
gtaaataggccacatccttggggtcttcttattacattcattgagctgattaaaaatcca
gcctttaaattctggaaccatgagtttgtgcactgtgccccggaaattgaaaagttattc
cagtcagtggcacagtgctgcatgggacagaagcaggcccagcaagtaatggaagggaca
ggtgccagttaa
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integrated database retrieval system
