Suncus etruscus (white-toothed pygmy shrew): 126027332
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Entry
126027332 CDS
T09902
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126027332 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126027332 (EDC4)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126027332 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
126027332 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EDC4L
WD40_Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_HPS5
WDR55
DUF445
Beta-prop_WDR3_1st
Motif
Other DBs
NCBI-GeneID:
126027332
NCBI-ProteinID:
XP_049642285
LinkDB
All DBs
Position
14:62363477..62377900
Genome browser
AA seq
1413 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPNAESQRPPNTYNGDLNGLLVPDPLCSGDGT
STNKSGLRTMPPLSLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHVNSPQLACLDEAGNLFVWRLTLVNCKIQEEIVVHIRQPEGTPLNHFRRIIWCP
FIPEESEECCEESSPTVALLHEDRAEVWDLEMLRSNHSTWPVDVSQIKQGFIVVKGHSTV
GIKPDSLGSSQCLSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRP
LSCLLFCDNHKKQDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVP
PSLKVCLDLSAEYLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVV
SRCRLRHTEVLPAEEESDSLSTDGPHGANPMEATAGVLIKLFCVHTKALQDVQIRFQPQL
NPDVVAPLPTHPTHEDFAFGGSRPELGSEGLGSTVHGSQPDLRRLVELPAPADFLSLSSE
TKPKLMTPDAFMTPSASLQQMAVSPGSSSSSSSSSSSSSSSSLTAVSAMSSTSAVDPALP
RAPEELTLSPKLQLESGLNVSSSSLQASPRNLLPSMLPGPVDKLTPKGPDQVPSVASALS
LELQEVEPLGLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGASAPEGLEPDS
MASAASALHLLSPRPRTGPELGPQLGLDGGPGDGDRHSTPSLLEAALTQEATGPDSQIWP
TAPDITRETCSSLAESPRNGLQEKHKSLAFHRPPYHLLPQHDSQDTSAEQSDHDDEVASL
ASVAGGFGTKVSAPRMPAKDWKTKGSPRASPKLKRRGKKEDGDSAVGSRHVEHQVVEPPE
DWPALIWQHQRELVELRHSQEELLQRLSAQMDGLQSTVTGHVERALESRHEQEQRWLERV
HAEWQQQGGQLQEQLTQQLSQTLSAAVAGRLERSIRDEIKKTVPPCVSKSLEPVAGQLSS
SVTTKLTAVEGSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEK
SCQAMFQQINDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQM
AATVSSSVRAEVEHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQLAVTSSIMQAMRS
AAGTPVPAAHIDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQ
PPCPLSQPVLLSLIQQLASDLGTKTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQK
LFQFLQAEPHNSLGKVARRLSLMLHGLVTPSLP
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcctgcgcgagcatcgacatcgaggacgctacgcagcacctgcgggacatc
ctcaagctggaccggccggcgggaggccccaatgcagagagccagcggccaccaaatacc
tacaatggggatctcaacgggctcctggtcccagaccctctctgctctggtgatggcacc
tcaacaaacaagtctggtctccgcaccatgccgccactcagcctgcaggagaagcaggtt
atatgcctctcaggagatgacagttctacctgtattgggattttggccaaagaagtagag
attgttgccagcagtgactctagcatctcaagcaaggctcgtgggagcaacaaggtgaaa
attcagcccgttgccaagtacgactgggaacaaaaatactactatggcaacctgattgct
gtgtccaactccttcctggcttatgccattcgggctgccaacaatggctccgcgatggtc
cgagtaatcagcgtcagcacttctgagcggactctgctcaagggcttcacgggcagcgtg
gccgatctggccttcgcacacgtcaactccccgcagctggcttgcctggatgaggccggc
aatctctttgtatggcgcttgaccctggttaactgcaagattcaagaagagatcgtggtc
cacattcggcagccagagggcacgccgctgaaccacttccgcaggattatctggtgtccc
ttcatccctgaggaaagtgaggagtgctgtgaggagagcagccccactgtggccctgctg
catgaggaccgggctgaggtgtgggacctggaaatgcttcgctccaaccacagcacctgg
ccggtagacgtcagccaaatcaaacagggtttcatcgtggtaaaaggccacagcacagta
ggtataaagccagactctttgggttcttcccagtgtctgagtgaaggggccctctcccca
gatgggactgttctggccactgcgagtcatgatggctttgtcaagttctggcagatctac
attgaggggcaggatgagcccaggtgtctgcacgagtggaagcctcatgatggacgcccc
ctctcctgcctcttgttctgtgacaaccataagaaacaggatcctgaggtccctttctgg
aggttcctcatcactggtgctgaccagaaccgggagcttaaaatgtggtgcacagtgtcc
tggacctgcctgcaaaccatccgcttctccccagatatctttagttctgtgagtgtgccc
ccgagcctcaaggtttgcctcgacctctcggctgaatacctgattctcagcgatgtgcag
cggaaggtcctgtatgtgatggagctgctgcagaaccaggaggagggccgggcctgcttc
agctccatctctgagttcctgctcacacaccctgtgctcagctttgggatccaggttgta
agtcgctgccggctgcggcacacagaggtgcttcctgctgaagaggagagtgacagcctc
agcaccgatgggccccacggagccaatcccatggaggccacagctggtgtgctcatcaag
ctcttctgcgtgcatactaaggcattgcaagatgtgcagatccgctttcagccacagctg
aaccctgacgtggtggcaccactgcccacccaccctacccacgaggactttgcctttggg
gggtctcgaccagagctaggctctgaaggcctgggctccaccgtgcacggctcacagccc
gacctccggcgcctggtggaactgcctgcacccgctgacttcctcagcctgagcagtgag
accaagcccaagctgatgacacctgatgccttcatgactcccagcgcctccttgcagcag
atggcagtgtctccaggaagcagcagtagcagcagcagtagcagtagcagcagtagctcc
tcgtctctcacagccgtgtctgccatgagtagcacctccgctgtggaccctgccttgccc
agggctcccgaggagctgacactgagccctaagctgcagcttgaaagtggcctgaatgtg
agcagcagcagcctgcaggccagcccacgcaatctcttgcccagcatgcttccaggccca
gttgacaaactgactcccaagggaccagaccaggtaccttctgttgcctctgcactgtcc
ctggagttacaggaagtagagcccctggggctcccccaggcttctcccagccgcacccgt
tcgcctgatgttatctcctcagcttccactgccctgtcccaggacatccccgagattgct
tctgaggccctgtcccgtggctttggcgcctctgcccccgagggcctagagccagacagc
atggcctcagctgcctcggcactccacctcttgtcccctcggccccgcacagggcctgag
cttggtccccagcttggcctggatggaggccctggggatggtgatcggcatagcaccccc
tcactcctggaggctgccttgacccaggaagccactggccctgacagtcagatatggcca
acggcccccgatatcactcgagagacctgcagtagtctggcagaaagccccaggaatggc
ctgcaagaaaagcacaagagcctggccttccaccgacctccttatcacctgctgcctcag
catgacagccaagacaccagtgctgagcagagtgaccatgatgatgaggtggccagcctt
gcctctgtggcagggggctttggcaccaaggtttctgcaccacggatgcctgccaaggac
tggaaaaccaagggatctcctcgagcttctcccaagctgaaaaggaggggcaaaaaggag
gatggggattcagctgtggggtcccggcatgtagagcaccaggtggtggagccccctgag
gattggccggcgctgatctggcaacatcaaagagagctggtggagctgcggcatagccag
gaagagcttttgcagcgtctgagtgcgcagatggacgggctgcagagcactgtcacgggc
catgttgagcgggcactcgagtcccgacacgagcaggaacagcggtggctggagcgggtg
catgctgagtggcagcagcaaggtgggcaattgcaggaacagctgacacagcagctgtcc
cagaccctatctgcagctgtggctgggaggctggagcgtagcatccgggacgagatcaag
aagacagtgcctccatgtgtctctaagagtctggagcctgtggcaggccagttgagcagt
tcagtgaccaccaagctcacagctgtagaggggagcatgaaagagaatatctccaagctg
ctcaagtccaagaacttgacagatgctatcgcccgagcagctgcagacacgttacagggg
ccaatgcaggctgcctaccgtgaagccttccagagtgtggtgctgcccgccttcgagaag
agctgccaggccatgttccagcagatcaacgacagcttccgactgggcacccaggaatac
ttgcagcaactggagagccacatgaagagccggaaggcccgggagcaagaggcacgtgag
cctgtgttggcccaactacggggactagtcagcacgctgcagggcgccaccgagcagatg
gcagccactgtgtccagcagtgtccgggctgaggtggagcaccagctgcacgtggctgtg
ggcagccttcaggagtccattttagcacaggtgcagcgcattgttaagggtgaggtgagt
gtggctctcaaggagcagcaattggccgtcacctccagcatcatgcaggccatgcgttca
gccgctggcacaccagttcctgccgctcacattgactgccaggcccagcaagcccacatc
ttgcagctgcttcagcagggccacctcaaccaggccttccagcaggcactgacagctgcc
gatctgaacctggtgctgtatgtgtgtgaaactgtggacccaggccaagtgtttggacaa
cctccctgtcccctctcccagccggtccttctctcccttatccagcagctggcctctgac
ctaggcactaaaactgacctcaagctcagctacctggaagaggcagtgatgcatctggac
cacagtgaccccatcactcgagaccacatgggctctgtcatggctcaggtgcgccagaag
cttttccagtttctgcaggctgagccacacaattcacttggcaaagtggcccggcgtctc
agcctcatgctacacggccttgtcactcccagcctcccttaa
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