KEGG   Suncus etruscus (white-toothed pygmy shrew): 126027803
Entry
126027803         CDS       T09902                                 
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03440  Homologous recombination
setr03450  Non-homologous end-joining
setr04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    126027803 (RAD50)
   03450 Non-homologous end-joining
    126027803 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    126027803 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:setr03032]
    126027803 (RAD50)
   03400 DNA repair and recombination proteins [BR:setr03400]
    126027803 (RAD50)
DNA replication proteins [BR:setr03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    126027803 (RAD50)
DNA repair and recombination proteins [BR:setr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     126027803 (RAD50)
    BRCA1-C complex
     126027803 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     126027803 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SbcC_Walker_B SMC_N AAA_15 DUF2703 AAA_29 Tannase
Other DBs
NCBI-GeneID: 126027803
NCBI-ProteinID: XP_049642775
LinkDB
Position
14:complement(32909243..32988249)
AA seq 1312 aa
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGDLVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSISSKCAEIDREMISSLGVSKSVLSNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQMQGQKVKECQTELKYLKQNKEKACEIRDQIISKEAQLASSKEI
VKSYENELDPLKNRLKEIEQNLSKIMRLDNEVKALDSRKKQMEKDNAELEQKMEKVFQGT
DEQLNDLYLNHQRTVREKERRLVDGQRELEKLNKESRLLNQEKAELLVEQGRLQLQADRH
QEHIRARDSLIQSLSTQLELDGFERGPFSERQIKNFHKLVRERQEIEAETARQLMNDFTE
KEALKQKQIDEIRDKKTGLGRIIELKSEILNKKQNELKNVKYELQQLEGSSDRILELDRE
LTKAEHELSKAEKNCNIEKLKTEVISLQNEKADLDRILRKLDQEMEQLNHHTTTRTQMEM
LTKDKADKDEQIRKIKSRHSDELSSLLGYFPNKKQLEDWLHSKAKEINQTRDRLAKLNKE
LASAEQNKNHTTSELKRKEEQLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLSDENQSCCPVCQRVFQTEAELQEVVSDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNINRDIQRLKNDIEEQETLLGAVIP
EEESAKVCLTDITIMERFQMELKDVERKIAQQAAKLQGVDLERTVQQVNQEKQEKQHKLD
TVSSKIELNRKFIQDQQEQIQHLKSTTNELKSEKLQISSNLQRRQQMEEQTVELSTEVQS
LHRELKDAKEQISPLETALEKFQQEKEELMNKKNMNNKIAQDKMNDIKEKVKHIHNYVKD
IENYIQDGKDDYKKQKESELNKVITQLSEYEKHKEKINNEMGIMRQDIDTQKIQERWLQD
NLTLRKRKEELKEVEEERKQHLKEMGQMKVLQLKNEHQTLEEKIDNIKRNHSVAVGRQKG
YEEEIIHFKKELREPQFADAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVTASDKRRNYNYRVVMLKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVENFYRIKKNADQCSEIIKCSVNTLGSYVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcccggatcgaaaagatgagcattctgggcgtgcggagttttggaatcgaggacaaa
gataagcaaattatcaccttcttcagccccctcacaattctggtcggacccaatggggcg
gggaagacgaccatcattgagtgtctaaaatatatttgtaccggagatttccctcctgga
accaaaggaaatacctttgttcatgatcccaaggttgctcaggaaacagatgtaagagcc
cagattcgtctgcagtttcgtgatgtcaatggagatcttgtagctgtgcaaagatctatg
gtgtgtactcagaaaagtaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaaacacggtgaaaaagtcagtatcagctcgaagtgtgcagaaattgaccgagagatg
ataagttctcttggagtttccaagtctgtgcttagtaatgtcattttctgtcaccaagaa
gactctaattggcctttaagtgaaggaaaggctttgaagcaaaaatttgatgagattttc
tcagcaacaaggtacattaaagccttggaaacacttcgacaagtgcgtcagatgcaaggt
cagaaagtaaaagaatgtcaaacagaactaaagtatctgaagcaaaataaggaaaaagcg
tgtgagattcgtgatcagatcattagcaaggaagctcagttagcatcttcaaaggaaatt
gtcaaatcctatgagaatgaacttgatccattaaagaatcgtttgaaagaaattgaacaa
aatctctctaaaataatgagacttgacaatgaagttaaagccttggatagccgaaagaag
cagatggaaaaagataatgcagaactggaacagaaaatggaaaaggtttttcagggcact
gatgagcagctaaatgatttatatctcaatcatcagagaacagtaagagagaaagagagg
agactggtagatggtcagcgtgaactggaaaaattaaataaggaatctaggcttcttaat
caagaaaaagcagaattacttgttgaacagggtcgtttacagctacaagcagatcgccat
caagaacatatccgagctagagattcattaattcagtctttgtcaacacagctagaattg
gatggctttgagcgaggtccatttagtgaaagacagattaaaaattttcacaaacttgtg
agagaaagacaagaaattgaagcagaaactgccaggcaactgatgaatgattttacagaa
aaagaggctctgaaacaaaaacagatagatgaaataagggataagaaaactggactggga
agaataattgagttaaaatcagaaatcctaaataagaagcaaaatgaattgaaaaatgtg
aaatacgaattgcagcagttggaaggctcttcagacaggattcttgaactggaccgagag
cttacaaaagctgaacatgagctaagcaaagctgagaaaaactgcaatatagaaaaatta
aaaactgaagtaataagtcttcaaaatgagaaagcagacttagataggatactgcgtaaa
ttggaccaggaaatggagcaattaaaccatcatacaacaacacgtacccagatggagatg
ctgaccaaagataaagctgataaagatgagcaaatcagaaaaataaaatctaggcacagt
gatgaattgtcttcattattagggtattttcctaacaaaaaacaacttgaagactggctc
catagtaaagcaaaagaaattaaccagaccagagacagacttgccaaattgaataaggaa
ctagcttcagctgagcaaaataaaaatcatacaactagtgagctaaaaagaaaggaagaa
caattatccagttatgaagacaagttgtttgatgtttgtggtagccaagattttgaaagt
gatttagataggcttaaagaagaaattgaaaaatcctcaaagcaacgagctatgctggct
ggagccacagcagtttactcccagtttattactcaactcagtgatgaaaaccagtcctgt
tgtcctgtctgtcagagagtttttcaaactgaagctgaattacaagaagtcgtcagtgat
ttgcagtctaagttgcgtcttgctccagataaactcaagtcaacagaatcagagcttaaa
aaaaaagaaaaacgtcgtgatgagatgctgggacttgtgcccatgaggcaaagtataatt
gatttgaaggagaaagaaataccagaattaagaaacaaactgcagaatatcaatagagac
atacaacgcctaaagaatgatatagaagaacaggaaactctcttgggtgcagtaatacct
gaagaagaaagtgctaaagtgtgtctgacagatattacaattatggagagatttcagatg
gaacttaaagatgttgaaagaaaaattgcacaacaagcagctaagctacaaggagtagac
ttggagagaactgttcaacaagtaaaccaggaaaaacaggaaaaacaacacaaattagat
acagtttctagtaagattgagttgaataggaagtttatacaggatcagcaggaacagatt
caacacctaaaaagtacaacaaatgaactgaaatcagagaaacttcagatatcctccaat
ttacaacgtcgtcagcaaatggaggagcaaactgtggaattatccactgaagtacaatcc
ttacatagagaattaaaggatgcaaaagagcagataagtcctttggaaacagcattggaa
aagttccagcaggaaaaagaagaattaatgaataaaaaaaacatgaacaacaaaatagca
caggataaaatgaatgatataaaagagaaggttaaacatattcacaattatgtgaaagac
attgagaattatattcaagatggaaaagatgactataaaaagcaaaaagaaagcgagctg
aataaagtaataactcaactaagtgaatacgagaaacacaaagaaaagataaacaatgaa
atgggaatcatgagacaagatattgatacacagaaaatacaagaaagatggctacaggat
aaccttactttgagaaaaagaaaagaagaacttaaagaagttgaagaagaaagaaaacaa
catttgaaagaaatgggtcaaatgaaggttttgcaattgaaaaatgaacatcaaacattg
gaagaaaaaatagataacataaaaagaaatcacagtgtagctgtggggagacagaaaggt
tatgaggaagaaattattcactttaagaaagaacttcgagaacctcagtttgcggatgct
gaggaaaaatacagagaaatgatgattgttatgagaacaacagagcttgtgaataaagat
ctagacatttactataagacccttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaataaaattattcgtgacctatggcgaagcacctatcgtggacaagatatt
gaatacatagaaatacgttccgatgctgatgaaaatgtaacagcttcagataaaaggcgg
aattacaactaccgagtggtgatgctaaaaggagacacagccttggatatgcgaggacga
tgcagtgctggtcaaaaggtattggcctcacttatcattcgcttagccttggccgaaaca
ttctgcttgaactgtggaatccttgctttggatgaaccaacgaccaatctggaccgagaa
aacattgaatctcttgcacatgctctggttgagataataaaaagtcgctcgcagcaacga
aacttccagcttctggtaattactcacgatgaagattttgtggagcttttggggcgttct
gaatatgtggagaacttctaccggattaagaagaacgctgatcagtgctcagagattata
aaatgcagtgttaacaccctgggatcttacgttcattga

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