Suncus etruscus (white-toothed pygmy shrew): 126027826
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Entry
126027826 CDS
T09902
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
126027826 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
setr01009
]
126027826 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
setr04515
]
126027826 (PCDH1)
Protein phosphatases and associated proteins [BR:
setr01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
126027826 (PCDH1)
Cell adhesion molecules [BR:
setr04515
]
Cadherins
Protocadherins
126027826 (PCDH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
126027826
NCBI-ProteinID:
XP_049642797
LinkDB
All DBs
Position
14:23323095..23348361
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AA seq
1238 aa
AA seq
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MDSSRAGGRRCPEAALLFLGPVRMGPLRPSPGPGGQRWLLPPLLLALLLWVAPSPGYATQ
VLYKVQEEQPPNTLIGSLAADYGLPDMGHLYKLEVGAPYLRVEGKTGDIFTTETSIDREG
LRECQNQLPSEPCILEFEVSITDLTQSSSPRLLEGQIEVLDINDNTPNFASPIITLPIPE
NTNIGSLFPIPMASDRDSGPNGVASYELQAGPEAQELFGLQVAEDQEGKQPQLIVMGNLD
RERLDTYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSV
IQVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSVLRFSVLA
KDRGTNPKSARAQVVVTVKDMNDNAPSIEIRGIGLVTHQDGMANISEDVAEETAVALVQV
SDRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAV
DSGNPPLSSTNSLKVQVVDVNDNAPVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNA
ELVYSLEPEPAAKGLFTISPETGEIRVKSSLDREQRDSYELKVVAADRGSPSLQGTATVL
VNVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFV
IQNGTGTILSSLSFDREHQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPS
NASHSLLTPQTRLGEKVGQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKE
IERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLTNHTLLEMLLGHSLDTPLDIDIA
GDPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAP
KPSGKASKGNKSKGKKSKTPKPVKPVEDEDETGLQKSLKFNLMSDAPGDSPRIHLPLNYP
PGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSD
YSYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRL
GPLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQS
SPSRRAKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEERNTKTAPVRLLPSYSAFSHSSH
DSCKDSAALEEIPLTQTSDLQPAAAPAPAPTAKREIYL
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atggacagcagcagggcgggcggccggcgctgccccgaggcggccctcctgtttctggga
cccgtcaggatggggcccctgaggcccagcccaggccctggggggcagcggtggctcctg
ccccccctgctgctagctctgctgctctgggtggctccatccccaggctatgccacgcag
gtcttgtacaaagtgcaggaagaacagccgcccaataccctcatcgggagcctggctgca
gactacggtttaccagacatgggccacctgtacaaactggaggtgggcgccccatacctc
cgggtggaaggcaagacgggcgacatcttcaccactgagacctcaattgaccgcgagggg
ctccgtgaatgccagaaccagctgcccagcgagccctgcatcctggagttcgaggtgtct
atcactgatctcacgcagagctccagcccccggctgctggagggtcagatcgaggtgctg
gacatcaacgacaacacgcccaacttcgcttcacccatcatcacgctgcccatccctgag
aacaccaacatcggttcgctcttccccatccccatggcctccgaccgcgactcggggccc
aacggtgtggcctcctatgagttgcaggccgggcctgaggcgcaggagttgtttgggctg
caagtggctgaggaccaggaggggaagcagccacagctcattgtcatgggcaacctggac
cgggagcgcctggacacctatgacctcaccatcaaggtacaggatggcgggagcccccct
cgcgccagcagcgccctgctgcgcgtcactgtgctggacaccaatgacaacgcccccaag
ttcgagcgaccctcatatgaggctgagctgtcggagaacagccccatcggtcactcggtt
atccaggtgaaggccaatgactcagaccaaggtgccaacgccgagatcgactacacattc
caccaggctccagaagtggttcggcgcctcctgcggctggacaggaacacagggctcatc
acggtgcagggcccagtggatcgggaggacctcagtgtcctacgcttctctgtgctggcc
aaggaccgaggcaccaatcccaagagtgcccgcgcacaggtggtggtgactgtgaaggac
atgaatgacaatgcccccagcatcgagatccggggcattgggctggtgacacaccaggac
gggatggccaatatttccgaggatgtggcagaggaaacagccgtggcactggtgcaggtg
tcagacagagatgagggtgagaacgcggccgtcacctgtgtggttgcaggggatgtgccc
ttccagctgcgccaggccagcgagactggcagcgatagcaaaaagaagtacttcctgcag
accactactccgctggactacgagaaggtcaaagactacaccatcgagattgtagctgta
gactcggggaacccaccgctctccagcaccaactcgctcaaggttcaggtggtggatgtg
aacgacaacgcgcccgtgttcacccagagcatcactgaggtggccttcccagagaacaac
aagccaggggaggtggttgccgaggtcacagccagcgatgctgactcgggctcaaatgct
gagctggtctactctctggagcctgagccggctgccaaaggcctcttcaccatctcgcca
gagacgggtgagatccgggtgaagagctccctagaccgggagcagcgggacagctatgaa
ttgaaggtggtggccgccgaccggggcagccccagcttgcagggcacggccaccgtactg
gtcaacgtgctggactgcaacgacaatgaccccaagttcatgctgagcggctacaacttc
tcggtgatggagaacatgccagcgctgagtcctgtgggcatggtgaccgtcattgatggg
gacaagggggagaatgcccgggtgcagctcacagtggagcaggataatggggactttgtc
atccagaacggcacaggtaccatcctgtccagcctgagcttcgaccgtgagcaccaaagc
acctacaccttccagctgaaggcggtggatggtggggtcccaccacgctcagcttatgtc
ggcgtcaccatcaatgtgctggacgagaatgacaacgcgccctatattactgccccttcc
aatgcctcgcacagcctgctgaccccccagactcgtctcggcgagaaagtcggccaggtg
acagctgaggacattgactccggggtcaatgccgagcttacctacagcattgctgggggc
aacccctatggactgttccagattgggtcgcattcaggcgccatcaccctggagaaggag
attgagcggcgccaccacggcctgcaccggctggtggtgaaggtgagtgaccgcggcaag
cccccacgctatggcacagccttggtccacctctacgtcaatgagaccttaaccaaccac
acgctgctggagatgctgctgggccacagcctggacacgccgctagatatagacatcgct
ggtgacccggagtacgagcgctccaagcagcggggcaacatcctcttcggcgtggtggcc
ggcgtggtggctgtggccctactcattgccctggcagtgctcgtgcgctattgccggcag
cgggaggccaagagtggctaccaggctggaaaaaaggagaccaaggatctgtatgccccc
aagcccagcggcaaagcctccaagggcaacaagagtaaaggcaagaagagcaagaccccc
aagcccgtgaaacccgtggaagacgaggacgagactgggctgcagaagtccctcaagttc
aacctgatgagcgatgcccctggggacagtccccgcatccatctgcccctcaactaccct
cctggcagccctgacctgggccgccactaccgctctaactcgccgctgccctccatccag
ctgcagccacagtcaccctcagcctccaagaagcaccaggtggtgcaggacctgccgccc
gcaaacacatttgtgggcactggggacaccacgtccacgggctccgagcagtactccgac
tacagctaccgcaccaacccccccaagtaccccagcaagcagttacctcaccgccgagtc
accttctccgccaccagccaagcccaggagctgcaggacccgtcccaacacagctactac
gacagcggcctggaggagtcggagacaccatccagcaagtcttcctcggggccccggctt
ggccccttggccctgcccgaggaccactatgagcgcaccacccccgatggcagcatagga
gagatggagcaccctgagaatgacctgcggcctctgcccgacgtcgccatgacgggcacg
tgcacccgggagtgcagcgagttcggccactcggacacgtgctggatgcccggccagtcg
tcccccagccgccgcgccaagagcagcgccctcaaactctccaccttcgtgccttaccag
gaccgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaacggaac
accaaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccat
gactcttgcaaggactcggccgccttggaggagattcccctgacccagacctcggacttg
cagcccgcagccgccccggcgcccgccccgacagccaagcgcgagatctacctgtga
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