Suncus etruscus (white-toothed pygmy shrew): 126027836
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Entry
126027836 CDS
T09902
Name
(RefSeq) protocadherin alpha-C2 isoform X1
KO
K16493
protocadherin alpha
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
setr03036
]
126027836
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
setr04515
]
126027836
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
126027836
Cell adhesion molecules [BR:
setr04515
]
Cadherins
Protocadherins
126027836
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Ig_Cad99C_N
Ig_CLSTN
Motif
Other DBs
NCBI-GeneID:
126027836
NCBI-ProteinID:
XP_049642807
LinkDB
All DBs
Position
14:complement(24255681..24463637)
Genome browser
AA seq
1012 aa
AA seq
DB search
MELAAPGPGATERPRLPPRRSWLLPPPLPPPPPPLLLLLLLLLLRPGPAASQLRYSVPEE
QAPGAPVGNVARALGLELRRLGPGCLRLSHQGAPSRRYLELDLTSGELFVNERIDREALC
EQRPRCLLSLEVLAHSPVAVSTVEVEVRDINDNSPRFPRPDYQLQVSESVAPGARFHIES
AQDPDVGTNSIQTFELSPSEHFELDLKPLQENSKVLELVLRKGLDREQAAWHHLVLTAVD
GGSPARSGTAQISVRVLDTNDNSPTFHQSTYRVQLREDAPPGTLVVRLNASDPDEGSNGE
LRYSLSSYTSERERQLFSIDASTGEVRVSGALDYEEASAYQIYVQATDRGPVPMVGHCKV
LVDIVDVNDNAPEIVLRDLISPIPENAPLDTIVAFLSVSDRDSGANQKVNLGLEAGLPFR
LNGLGNSYTLLVSGPLDRERVAAYNITVTATDEGVPQLTSQRTLQVKISDVNDNPPSFQE
ASYSVYVQENNLPGALLCTVQATDPDEKENAEVTYSLLERELQGLPVTSYVSIDSTSGSL
YAVNSFDYEKFREFYVIVEAQDKGQPQLSSTVTVNVYVVDVNDHAPHILYPTSTNFSVAI
EMMPRTAPAGYLVTKVIAMDSDSGQNAWLFYHLAQSSDLELFKVELHSGEIRTTRKLGDD
SGSTFNLTVMVRDNGDPSLSASVAITVAVVDRVSRLLPDPQRHVKGSRTYSEITLYLIIA
LSTVSFIFLLTIIVLGIIKCYHYTAYGTTCCAGFCGVRERSPVDLYKQANNNIDSRIPHG
LKVQPHFIEVRGNGSLTKTYCYKACLTAGSGSDTFMFYNTGAQTGPGQGATGDSRQHTNQ
SRLSAGNLIILKNEAVPPNEPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQ
WPTVSSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQAGSGELPDKFIIPGSPAIIS
IRQEPTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSATDNSDQ
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atggagctggcggcccccggacccggcgccaccgagcgcccccgactcccgccgcgcagg
tcctggctgctgccgccgcccctgccgcccccgccgccgccgctcctgctgctcctgctg
ctgctgctgctgcggccgggccccgcagcctcccagctgcgctactcggtgccggaggag
caggcgcccggcgcgcccgtggggaacgtggcgcgcgcgctggggctggagctgcggcgc
ctgggtcccggctgcctgcgcctgagccatcagggcgcgcccagccgccgctacctggag
ctggacctgacgagcggcgagctgttcgtcaacgagcgcatcgaccgcgaggcgctgtgc
gagcagcggcctcgctgcctgctcagcctggaggtgctggcgcacagccccgtggccgtg
agcaccgtggaggtggaggtgcgcgacatcaacgacaactcgccgcgttttccgcggccc
gattaccagctgcaggtcagcgagtcggtggcgcccggggcgcgcttccacatcgagagc
gcgcaggaccccgacgtgggcactaactcgatacagaccttcgaactcagccccagcgag
catttcgagctggacctgaagcctctgcaggagaacagtaaggtgttggaactggtgctc
cggaagggcctggaccgcgagcaggccgcctggcaccatctggtcctcaccgcagtcgac
gggggcagcccggcacgctcaggcacagcccagatctccgtgcgcgtcctggacacgaac
gacaactcgcccaccttccaccagtccacttaccgcgtccagcttcgggaggatgcgccc
ccgggcacactggtggtgaggctgaacgcctcggacccggatgagggctccaacggcgaa
ctcaggtactccctgagcagttacacgtcggaacgggagaggcagctcttcagcatcgat
gccagcaccggggaggtgcgggtgagtggggcgctagattacgaggaggcctctgcctac
cagatctacgtgcaggcgaccgaccggggcccggtgcccatggtgggccactgcaaggtg
ctggtggacattgtggatgtgaatgataacgcacctgaaatagtgctcagggacctcata
agccccatcccagagaacgcgcccctcgacaccatcgtggcttttctcagtgtcagcgac
cgcgactcaggtgccaaccagaaagtgaacctgggcctggaggctgggctgcctttccgg
ctgaatggcctgggaaattcctacacactgctggtgagcggcccgctggacagggagcgg
gtggctgcctacaacatcacggtgaccgccacggacgagggcgtgccgcagctcacatcc
cagcggaccctgcaggtcaagatctcagacgtcaacgacaatccaccgagcttccaggag
gcctcctactctgtctacgtccaggagaacaatctgcctggtgccttgctctgcaccgtg
caagccaccgacccagacgagaaggagaatgcggaggtgacttactccctcctggagagg
gagcttcaagggctgcctgtcacctcctatgtctccatcgacagcaccagtggcagcctt
tatgctgtcaactcctttgactacgagaagtttcgggagttctatgtgatcgtggaggcc
caggacaaggggcaaccacagctgagcagcactgtgacggtcaacgtgtacgtggtggac
gtgaatgaccatgcccctcacatcctgtaccctacctcaaccaatttctccgtagctatc
gagatgatgcctcgaactgcccctgctggctatctggtcaccaaagtcatagccatggac
tcagactcggggcagaacgcatggctcttttaccacctggcccagtcctcggacctggag
ctctttaaagtcgagctgcactcgggagaaattaggactaccaggaagctgggtgatgac
agtggaagcactttcaacctgacggtgatggtccgcgacaatggggatccctcgctgtca
gcctccgtggccattacagttgccgtggtggaccgggtctcgcgactcctcccggatcct
cagaggcatgtaaagggttctcggacatactctgaaatcacactttatctcatcatcgca
ctaagcacagtgtcttttatattccttttgacaatcattgttctgggcatcatcaagtgc
taccactacacagcatacggcaccacatgctgtgcaggcttttgtggcgtgagggagcgg
agccctgtggacctgtacaaacaggccaataataacattgactccaggatacctcacggc
ctcaaagtacaacctcacttcattgaagtgcggggcaatggctccctcaccaagacctac
tgctataaggcctgtctgaccgctggctcagggagtgatacattcatgttttacaacaca
ggggcacagacaggcccggggcaaggagcaactggtgacagcaggcagcacacaaatcaa
agtagactgagtgctgggaacctgattattcttaaaaatgaggctgttcctcccaatgag
ccgcgacagcccaaccctgactggcgttactctgcatccctgagagccggcatgcacagc
tctgtgcacctggaggaagccggcattctacgggctgggccaggaggccccgatcagcag
tggccaacagtatccagtgcaacaccagaaccagaggccggagaggtgtcccctccagta
ggtgctggtgtcaacagcaacagctggacatttaaatacggaccaggcaaccccaaacaa
gctggttccggtgagttgccagacaaattcattatcccaggatctcctgcaatcatctcc
atccggcaggagcctactaacagccaaattgacaaaagtgacttcataaccttcggcaaa
aaggaggagaccaagaaaaagaagaaaaagaagaagggtaacaagacccaggagaaaaaa
gagaaagggaacagcgcgaccgataacagtgaccagtga
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