Suncus etruscus (white-toothed pygmy shrew): 126027847
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Entry
126027847 CDS
T09902
Symbol
PCDHB1
Name
(RefSeq) protocadherin beta-1
KO
K16494
protocadherin beta
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
setr04515
]
126027847 (PCDHB1)
Cell adhesion molecules [BR:
setr04515
]
Cadherins
Protocadherins
126027847 (PCDHB1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
Ly49
Motif
Other DBs
NCBI-GeneID:
126027847
NCBI-ProteinID:
XP_049642840
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All DBs
Position
14:complement(24214533..24216965)
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AA seq
810 aa
AA seq
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MAMVPRKLLHSRQVQSFLLFLCVSVGGAATIRYSVAEEMESGSFVANVAKDLGLEVGKLA
GRGARLVSEGNKLHFRLHRKTGDLFVKEKLDRESLCGKADPCVLHFEIVLGEPLQSFRAE
VRVFDINDNAPVFLNKEPVLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANSYFHL
HTRFRSHGPKYAELVLDKPLDREEQPEVNLTITAVDGGSPPKSGSAHIRVEVLDVNDHVP
QFSRLVYRAQVPENSAIGTLVATVTATDLDEGSNKEITYSLAQNPEPILQTFKINPQNGE
VRLQGPLDFEAVETYDIDIQATDGGGLSAHSKVLVEVVDVNDNPPEVTVSSVSSPLPEDS
PLQTVVALFSLRDRDVRVGGKITCFIRDDLPFTVKPTFRNSYSLVTDRSLDREDVSSYNI
TLVAVDTGPPNLSTETVIQVLISDINDNPPQFQEDSYILTVRENNSPAILIGKVHAEDLD
MGENAQVTYSLLPPQSGDLSVFAYLSINSDNGKLYALRTMDYEAIQDFQFVVKATDGGFP
SLSSEVTVRVVILDDNDNRPMILYPLQNGTLPCNDLVPRSAEADYLVTKVVAVDGDSGQN
SWLSYHLLKATDPGLFSVQQQNGEIRTSRQISERDPMMQKLMILVQDHGQPALSTTASLN
ILLVDGFSEPYLQFRDPSKHSTRVNPSTKYLVISLAVLSFLFLLSVTVISVIHIYQKIST
YKEKFTIQEHFYDDCNFSNNLVQGRANGSLSQPCSYEMCSVTGTGNSEFRFLKRFMPNFP
FPHGTGEAPNPNRTRSRGSESHVQVADDYM
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggtacctaggaaactcttgcacagtaggcaagtgcaatcttttctccttttc
ctgtgcgtatctgtggggggcgcggcaaccatccgctattcagtggcggaggagatggag
agcggttcttttgtagctaatgtggcaaaggacctggggctggaggtagggaaactggct
ggacgcggggcaaggcttgtttccgagggcaacaaactgcatttccggctccaccgcaag
acgggggatctgtttgtaaaagagaaactggatagggagtcactttgtggcaaggccgac
ccatgcgttctgcactttgaaatagtcttaggggagcctctgcagtcctttcgcgctgag
gtcagggtatttgatatcaatgacaatgccccagttttcctaaacaaggagccggtttta
aagattccagagagcactcctctgggttcacggtttcctctgcagagtgcccaggacctg
gatgtgggtctcaatggtctccaaaactacaccttgagtgccaactcctatttccacctg
cacacccgcttccgcagtcacgggcccaaatatgctgagctggtgttggataagcccctg
gatagagaggagcagcctgaagtcaacttgacaattaccgcggtagatggcgggtcccca
cccaagtctggcagtgcccacatccgggtggaggtcctggacgtcaacgaccacgtgccc
cagttctcacggctggtgtaccgtgcccaggtaccggaaaatagcgccattggcactttg
gtggccacggtgacggccactgacctggacgaaggctccaataaggagataacttactct
ttagctcaaaacccagaacctatcctccagacatttaagattaaccctcaaaatggggag
gtcagactccagggccctttggattttgaagctgttgaaacgtacgatattgacattcaa
gctacggatggcggcggcctctctgctcacagcaaagtcctggtagaagtggtggatgtc
aatgacaatcctcctgaagtgacagtctcctctgtatccagccctcttcctgaggactcc
ccgctacagactgtggtggctcttttctctctccgagacagagacgttcgagtaggaggg
aaaatcacgtgcttcatcagagatgaccttcccttcactgtcaagcctacattcaggaat
tcttactcgctagtcactgacagaagtttggatcgggaggatgtttcgagttataatatc
acccttgttgccgtggacactgggccacccaatctgtccacggagactgtgatacaggtg
ctaatatctgacattaatgacaatcccccacaatttcaggaagactcttatatcttgact
gttcgagaaaataacagtcctgcaattttgattggtaaagttcatgctgaggatctggat
atgggtgaaaatgctcaagtaacatactcgctattgcctccccaaagtggggacctatca
gtctttgcttacctttccataaactcggacaatgggaagctctatgcactgagaactatg
gattatgaggccattcaagattttcaatttgtggttaaagcaacggatgggggctttcca
tcactgagtagtgaagttactgtccgagtggtcatcttggatgataatgataaccgccca
atgattctatatccactgcagaatggcactttgccttgcaatgacctggtgcccaggtct
gcagaggcagactacttagtgactaaagtggtagctgtggatggtgactcaggacagaat
tcttggctctcatatcatctacttaaagccactgatcctgggttattttctgttcaacaa
caaaatggagagatccgcacatcgaggcagatatctgaaagagatcccatgatgcagaaa
ctgatgattcttgttcaggatcatggccaaccagctctttccacgactgcctcactcaac
attctgctggtagatggcttttctgagccttacctgcagttccgagatccatccaagcat
tcgacaagggtaaatccatccactaaatacttggtcatttctctagctgtactttccttt
ctctttctcctctctgtcacagtgatctctgttatacacatttaccaaaagatttctaca
tataaagaaaagttcacaattcaagagcatttctatgatgattgtaatttctctaacaac
ctagtccaaggtagggccaatggatccttatcacagccttgttcctatgaaatgtgctca
gtcactggcactggcaacagtgagtttcggtttcttaaacgttttatgcccaactttcct
tttccccatggcactggagaggccccaaatcctaataggactaggtctcgggggtcagag
agccatgttcaagtagctgatgactatatgtag
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