Suncus etruscus (white-toothed pygmy shrew): 126028101
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Entry
126028101 CDS
T09902
Symbol
SUPT5H
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
126028101 (SUPT5H)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126028101 (SUPT5H)
03019 Messenger RNA biogenesis [BR:
setr03019
]
126028101 (SUPT5H)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
126028101 (SUPT5H)
RNA polymerase I system
126028101 (SUPT5H)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
126028101 (SUPT5H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
KOW1_SPT5
Spt5_N
GPKOW_C
DUF3912
Arabino_trans_N
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
126028101
NCBI-ProteinID:
XP_049643096
LinkDB
All DBs
Position
14:84032617..84059791
Genome browser
AA seq
1080 aa
AA seq
DB search
MSDSEDSNFSEEEDSDRSSEAEEAEVEEEQRSAAGSEKEEEPEEEEEEEEEEEYDEEEEE
EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
KIGEERATAISLMRKFIAYQCTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
LKMIPRIDYDRIKARMSLKDWFAKKKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVLLDP
QTVGVIVRLERETFQVLNMNGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
GPHSDREGEIRHLYRNIAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
MSPRISSPMHPSAGGQHGGFGSPGGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKDA
TESTARVELHSTCQTISVDRQRLTTVGSRRLGGMTSTYGRTPMYGSQTPMYGSGSRTPMY
GSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPS
PQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSPS
PQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPHT
PGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQAGVIRSVTGGMCSVYLKDSEKVVSISS
EHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKLLEA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaggacagcaatttctccgaggaggaggacagcgatcgcagcagcgag
gccgaggaggccgaggtagaagaagagcaaaggagtgcagcaggcagcgagaaggaggaa
gagccagaggaggaagaggaggaggaagaggaggaggagtatgatgaggaagaagaagag
gaagatgatgaccggccccccaagaaaccccgtcatggcggcttcattctggacgaagcc
gacgtggatgacgaatacgaggatgaagaccagtgggaagatggagcagaagacatccta
gagaaagcatccaacattgataatgtcgtcctggatgaagatcgttctggggctcgccgc
ctgcagaacctgtggagggatcaacgggaggaagaactgggcgagtattacatgaagaaa
tacgccaagtcatctgtgggagagacggtgtatggaggctccgatgaactctcggatgac
atcacccagcagcagctgctgccaggagtcaaggaccccaatctgtggacagtcaagtgt
aagattggggaggagcgggccacagccatctccttgatgcgcaagttcatcgcctaccag
tgcacagacacacccctgcagatcaagtcagtggtggcacctgagcatgtgaagggctac
atctatgtggaggcctacaagcagacccacgtgaagcaggccatcgagggggtaggcaac
ctgcgactgggctactggaaccagcagatggtgcccatcaaggagatgacagacgtgctc
aaggtggtcaaggaggtggccaacctgaagcccaaatcctgggtccgcctcaagcggggc
atctacaaggatgacattgcccaggtggattatgtggagccgagtcagaacaccatctcc
ctgaagatgatcccgcgaatagactacgatcgcatcaaggcccgcatgagcttgaaagac
tggtttgccaagaagaagaagtttaagcggcctccacagcggctatttgatgccgagaag
atcaggtccttgggtggtgacgtggcctctgatggagacttcctcatcttcgagggcaac
cgctacagccggaaaggctttctgttcaagagcttcgccatgtccgctgtgatcacggaa
ggcgtgaagcccaccctgtcggagctggagaagttcgaggatcagcctgagggcatcgac
ctggaggtggtgaccgagagcacagggaaggagcgagaacacaacttccagcctggggac
aacgtggaggtgtgtgaaggggagctcatcaacctccagggcaagatcctcagcgtggac
ggcaacaagatcaccatcatgccgaagcatgaggacctcaaggacatgctggagttcccg
gctcaggagctgcgaaagtatttcaagatgggggaccacgtgaaggtgatagctggccgc
ttcgagggtgacaccggcctcattgtgcgggtggaggagaactttgtcatcctcttctcc
gatctcaccatgcatgagctgaaggtgctgcctcgggacctgcagctctgctcggagaca
gcctccggagtggacgttggggggcagcacgagtggggcgagctggtgctgctagatccc
cagacggtgggcgtcatcgtgcggctggagcgggagaccttccaggtgctgaacatgaac
gggaaagtggtgaccgtcaggcaccaggctgtcacccggaagaaggacaaccgctttgca
gtggccctggactctgaacagaacaacatccatgtgaaagacattgtcaaggtcattgac
ggtccccactcggatcgggagggtgagatccgccatctctaccgtaacatcgccttcctg
cactgcaagaagctggtggaaaatgggggcatgttcgtctgcaagactcgtcatctagtg
cttgccgggggctcaaagccccgagatgtgaccaacttcaccgtgggtggcttcgcccca
atgagtcccaggatcagcagccccatgcaccccagtgctggaggtcagcatggcggcttt
ggcagccccggcggtggcatgagcaggggccggggccggagagacaacgaactcatcggc
cagaccgtgcgcatctcgcagggcccctacaaaggctacattggtgtggtcaaggatgcc
actgagtccacagcccgagtggagttgcattccacctgccagaccatctctgtagaccgt
cagcgcctcaccacggtgggctcccggcgcctagggggcatgacctccacgtatgggcgg
acgcccatgtacggatcccagacgcccatgtatggctctggctcccgcacgcccatgtat
ggctcccagacacccctccaggatggcagccgcaccccacactatgggtcacagacacca
ctgcatgatggcagccgcactcctgctcagagtggggcttgggaccccaataaccctaac
acgccatcaagggctgaggaagagtacgagtatgccttcgatgacgagcccacaccatct
ccacaagcctatgggggtacccccaacccccaaacacctggctatccagacccctcctcc
ccccaggtcaacccacagtacaacccacagaccccaggaacaccagccatgtacaacaca
gaccagttctccccctacgccgccccctccccacaaggctcctaccagcccagtcccagc
cctcagagctaccatcaggtggctcctagccctgcaggctaccagaacacccactcgccg
gccagctaccaccccacgccctcgcccatggcctatcaggccagccccagtcccagccct
gtggggtacagtcctatgacacccggcgccccttctcctggaggctacaacccacatacc
ccaggctcagggatcgagcagaattccagcgactgggtaaccactgacatccaggtcaag
gtgcgggacacctacctggacacgcaagtggtgggacaagctggcgtcatccgcagcgtc
acgggtggcatgtgctcagtgtacctgaaggacagtgagaaggtggtcagcatttccagc
gagcacctggagcccatcacgcccaccaagaacaacaaagtaaaggtgatcctgggggag
gaccgagaagccaccggtgtcctgctgagcatcgatggtgaggatggcatcgtccgcatg
gacctggatgagcagctcaaaatcctcaatctccgcttcctggggaagctgctggaggcc
tga
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