Suncus etruscus (white-toothed pygmy shrew): 126028193
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Entry
126028193 CDS
T09902
Symbol
SYMPK
Name
(RefSeq) symplekin isoform X1
KO
K06100
symplekin
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
setr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126028193 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
126028193 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
setr03021
]
126028193 (SYMPK)
03019 Messenger RNA biogenesis [BR:
setr03019
]
126028193 (SYMPK)
Transcription machinery [BR:
setr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126028193 (SYMPK)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126028193 (SYMPK)
U7-dependent histone pre-mRNA processing factors
126028193 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
AbiJ_NTD3
CRM1_C
Motif
Other DBs
NCBI-GeneID:
126028193
NCBI-ProteinID:
XP_049643196
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All DBs
Position
14:complement(89833711..89857688)
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AA seq
1285 aa
AA seq
DB search
MAGSSGDSVTRRSVASQFFTQEEGTGVDGMSTSERVVDLLNQAALITNDSKITTLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYRVALQWMVKSRVISELQEACWDMVSSMAGDIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLL
KFMVHPAISSINLTTALGSLASIARQRPMFMSEVIQAYETLHANLPPTLGKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPTGKDARKRPRDDSDPTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQLSGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VTKPESVLIKRRLSAQGQAISVVGSLSAMTALEEEAPQIKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDASL
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGTAGSLDKYEDCLIRLLSGLQEKPDQK
DGVFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDL
SSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSAKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
ARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLAAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMAILEASGKQEPEAKEAPVGPLEEDDLEPPAPPPRPPQDLMGLRLA
QEKALKRQLEEEQKLKPGSSAGAGAGPSAASTSTSTPAARPGPPQPPEEALDFREEGPEC
ETPGIFISVDDDSGLTEAALLDSSLEGPLPKEAAASSLASKEERSPQTLTPAAEDPAKTP
SPAATTAAAEEAASAAGDPEAKASS
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcagcagcggggacagcgtcacacggcgtagtgtggcctcacagtttttcacc
caagaggagggcacaggcgtcgatggcatgagcacctccgagcgagtggtggatctcctg
aaccaggcagcgctgatcaccaatgatagtaagatcacaacgctcaagcaggtccaggaa
ttgatcatcaacaaagaccccaccttgttggacaacttcctggatgaaatcatcgcattc
caagccgacaagtccatcgaagtgcgcaagtttgtcatcggcttcattgaagaggcctgt
aagcgggacatcgagctgctgctaaagctgatcgcgaacctgaacatgctgctgcgggac
gagaacgtgaacgtggtgaagaaggccatcctgaccatgacgcagctttaccgggtggcg
ctgcagtggatggtgaagtcgcgtgtcattagcgagctccaggaggcctgctgggacatg
gtgtcatccatggcaggggacatcatcctgctgctggactcggacaatgacggcatccgc
acacacgccatcaagtttgtggagggccttatcgtcaccctgtcgccacgcatggccgac
tccgaggtgccccggcgccaggagcacgacatcagcctggaccgcatcccccgtgaccac
ccctacatccagtacaatgtgctatgggaagaaggcaaggccgccctggagcagctgctc
aagttcatggtgcacccagccatttcctccatcaacctgaccaccgcgctgggctccctg
gccagcatcgcccgccagaggcccatgttcatgtcagaggtcatccaggcctacgaaacc
ctgcacgctaacctgccccctacgctgggcaagtcgcaggtgagcagcgttcgaaagaac
ctcaagctgcacctgctgagtgtcctaaagcacccggcctccttggagttccaggcccag
atcaccaccctgctggtggacctgggcaccccgcaggccgagatcgcccgcaacatgccc
actggcaaggatgcccgcaagcgtccccgggacgactcggatcctacactcaagaagatg
aagttagagcccaacctgggagaggatgatgaggacaaagacctggagccaggcccgtcg
gggacctcaaaggcctcagcccagctctcaggccagtcagacacggacatcactgctgag
ttcctgcagcctctgctcacgcccgataacgtggctaacctggtgctcatcagcatggtg
tacctgcctgagaccatgcctgcatccttccaagccatctacacccccgtggagtcggcg
ggcactgaggcccagatcaaacatttggcccggctcatggctacccagatgacggccgcc
ggcctgggcccaggtgtggagcagaccaaacagtgcaaagaggagcccaaggaggagaag
gtgacaaagcccgagagcgtgctcatcaaacggcgcctgtcggctcagggccaggccatc
tcggtggtgggctcgctgagcgccatgaccgccctggaggaggaggccccccaaatcaag
aggaggccggagcccataatcccagtcacgcagccccgactggcaggtgctggtgggcgc
aagaaaatcttccgtttgagcgacgtgctgaagccgctgacagacgcgcaggtcgaggcc
atgaaactgggggctgtgaagcgcatcctgagggctgagaaggccgtggcttgcagtggg
gcagcccaggtgcgcataaagatcctggccagcctggtgacgcagttcgatgccagtctg
aaggcggaggtcctgtcctttatcctggaggatgtgcgtgcccggctggacctggccttc
gcctggctctaccaggagtacaatgcttacctggccgcgggcaccgcgggctccctggac
aagtacgaggactgcctcattcgcttgctctctgggctacaggagaagcccgatcagaag
gacggagtcttcaccaaggtggtgctggaggcgccattgatcactgagagcgccctggag
gtgatccgcaagtattgcgaggatgagagccgcacctacctgggcatgtccactctccga
gacctgatcttcaagcgcccatcccgccagttccagtacctgcacgtcctgctggacctc
agctcccacgagaaagacaaggtgcgctcccaggcgctgctcttcattaagcgcatgtac
gagaaggagcagctgcgagagtacgtagagaagttcgcgctcaactacctgcagctgctg
gtgcaccccaacccaccctcagtgctctttggtgccgacaaggacacagaggtggcggca
ccctggacggaggagacggtgaagcagtgtctctacctctacctggcactcttgccccag
aaccacaagctgattcacgagctggcggccgtctacactgaggccatcgccgacatcaag
cgcacggtgctgcgggtcattgagcagccaatccggggcatgggcatgaattcgccggag
ctgctgctgctggtggaaaactgccccaagggcgccgagacgctggttacgcgttgcctg
cacagcctcacggacaaagtgccaccctccccagagctggtgaagcgggtgcgtgacctg
taccacaagcggctgcctgacgttcgcttccttatccccgtactcaatgggctggagaag
aaagaggtgatccaggccctaccaaaactcatcaagctcaaccccatcgtggtgaaggag
gttttcaaccggctgcttggcacccagcacggtgaagggaactcggccttgtccccgctg
aaccccggggagctgctgatcgccttacacaacatcgactcggccaagtgcgacatgaag
tccattatcaaagccaccaacctgtgcttcgccgagcgcaacgtgtacacgtcggaggtg
ctggccgtagtgatgcagcagctgatggagcagagcccactccccatgctgctcatgcgc
actgtcatccagtccctcaccatgtacccgcgcctgggcggcttcgtcatgaacatcctg
gcgcgcctcatcatgaagcaggtgtggaagtaccccaaggtctgggagggcttcatcaag
tgctgccagcgcaccaagccgcagagcttccaggtcatcctgcagctgccgccacagcag
ctggctgccgtcttcgataagtgcccggagctgcgcgagccgctgctggcccacgtccgc
tccttcaccccgcaccagcaagcccacatccccaactccatcatggccatcctggaggcc
agcggcaagcaggagcccgaggccaaggaggcacccgtggggcccctggaagaggacgac
ctggagcccccggccccgccgccccgacccccgcaggacctcatgggcctgcggctggcc
caggagaaggccttgaagcggcagctggaggaggagcagaagctgaagcccgggagcagc
gcgggagcgggagcggggccttccgccgcctccacctccacctccacccccgcagcccgg
ccgggcccgccgcagccgcccgaggaagccttggatttccgtgaggagggccccgagtgc
gagaccccgggcatcttcatcagcgtggacgacgactcggggctcaccgaggccgccctg
ctggactcgagtctcgaggggccgctccccaaggaggcagcagcgagcagcctggcctcc
aaggaggagcggagcccccagacgctcacgcccgcggcggaggaccccgccaagaccccc
agccccgctgccaccactgctgctgcggaggaggcggcctcggccgcgggggacccggag
gccaaagccagcagttga
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