Suncus etruscus (white-toothed pygmy shrew): 126028220
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Entry
126028220 CDS
T09902
Symbol
SMG9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126028220 (SMG9)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
126028220 (SMG9)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
AAA_30
DUF6079
Motif
Other DBs
NCBI-GeneID:
126028220
NCBI-ProteinID:
XP_049643224
EnsemblRapid:
ENSSRTG00000036606
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Position
14:complement(88163120..88178584)
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AA seq
520 aa
AA seq
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MSESGHSQPGLCGIERRRRWKEPGPGGPQNLSGPGGRERDYIAPWERERRDGSEETNTAV
IQKTPIILSKPPAERSKQPAPAATPAAPPAPAPLEKPIVLMKPREEGKGPTASSTASTPE
GTTPPPPATPAPPKGEKEGQRPTQPVYQIQNRGMGTAAPAAMDPVVGQAKLLPPERMKHS
IKLVDDQMNWCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVFRA
QSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLINNDRKLPPEYNLPHTYV
EMQSLQIAAFLFTVCHVVIVVQDWFTDLSLYRFLQTAEMVKPSTPSPSHESSSSSGSEEG
TEYYPHLVFLQNKARREDFCPRKLRQMHLMIDQLMAHSHLRYKGTLSMLQCDIFPGLPAD
FLDSEVNLFLVPFMDSEAESETPPRAGPGSSPLFSLLPGYRGHPSFQSLVSKLRSQVMSM
ARPQLSHTILTEKNWFHYAARIWDGVKKSSALAEYSRLLA
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtctgggcacagtcagccagggctctgcggcatagagcggcggcgccggtgg
aaggagccaggccctgggggcccccagaatctctctggacctggtggtcgggaacgggac
tacatcgcgccgtgggagagagagaggcgggatggcagtgaagagaccaacacggccgtc
atacagaagacccccatcatcctctctaagcctccagccgagcggtcgaagcagccagca
cctgcggccacccccgctgccccaccggctccagccccgctggagaaacctatcgttctt
atgaagccccgggaggaagggaaggggcctacagcctcgtccactgcctcaacccccgag
ggcaccacaccgccaccccctgcaacgccggctccccccaagggagagaaggaaggacag
aggcccacgcagcctgtgtaccagatccagaaccggggcatgggcaccgcggccccagca
gccatggaccctgtcgtgggccaggccaaactgctgcctccagagcgcatgaaacacagc
atcaagctggtggatgatcagatgaactggtgcgacagtgccatcgagtatctgctggac
cagactgatgtgttggtggttggtgtcctcggcctgcaagggacaggcaagtcaatggtg
atgtcactgttgtcagccaacactcctgaggaggaccagagggcatatgttttccgggca
cagagtgccgagatgaaggaaagagggggcaaccagaccagtggcatagacttttttatt
acccaggagcggatcgtgtttctggacacgcagcccatcctgagcccgtccatcttggac
catctcatcaacaacgaccgcaaactacctcctgagtacaacctcccccacacctacgtg
gagatgcagtccctccagatcgccgccttcctcttcactgtctgccatgtggtgattgtt
gtccaggactggtttactgacctgagtctgtacaggttcctgcagacagctgagatggta
aagccgtccacgccgtcccccagccatgagtcgagcagttcgtcaggctccgaggagggc
accgagtactaccctcacctggtcttcctgcagaacaaggcgcgccgagaggacttctgt
ccccgcaagctgcggcagatgcacctcatgatcgaccagctcatggcccactcgcacctg
cgctacaaggggaccctgtccatgctgcagtgcgacatctttcctgggctgccagccgac
ttcctggactcagaagtcaacctgttcctagtgcccttcatggacagcgaggcagagagc
gagaccccaccgagggcaggtcctggctccagcccgctcttctccctgctccctgggtac
aggggccaccccagcttccagtcgttggtgagcaaactccggagccaggtgatgtccatg
gcccgaccgcagctctcacacaccatcctcaccgagaagaactggttccactacgccgcc
cggatctgggacggggtgaaaaagtcctcagccctggccgagtacagtcgcctgctagcc
tga
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