Suncus etruscus (white-toothed pygmy shrew): 126028469
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Entry
126028469 CDS
T09902
Symbol
TDRD12
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
setr03036
]
126028469 (TDRD12)
Enzymes [BR:
setr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
126028469 (TDRD12)
Chromosome and associated proteins [BR:
setr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
126028469 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Motif
Other DBs
NCBI-GeneID:
126028469
NCBI-ProteinID:
XP_049643402
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All DBs
Position
14:78689669..78774248
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AA seq
1303 aa
AA seq
DB search
MLDLLVLKIEDPGCFWVIIKGCSPFLDHEVDYKKLNSAMNKFYNGMCQDTEVKPLVLEEG
QVCVVYCQELKCWCRAIIKSIVSSADHYQAECFLVDFAKYIPVKLKNIRVAMESFLQLPY
RAKKFRLYCTKPVTLHIDFCEDSAGIVPSRKWDSAAIQYFQSVIKETTQVEAKLCAVEED
TFEVYLYVTMKNEKVCVNDNLVAKNFAYYVSPMENKKSLDCLEKPRMNINSASFSSKLNP
ALTLWPMFLQRTNCQEMKSELTFLAQSLPRSWLNNVNKGPTVTVPDQTLKNNTDSLRNLP
KKTLDEEQQCIPLEDVNKCVESSVNWPTKRGITIYAEPDLSAPSTSCQKPNEKSFRLAEK
KEYNEKNGCVKLLQFLNPDPLKAGGISDLQQLQKLKSGMQQSLVVLRNKVEPCLSNDVLP
LSPHLKKILQRNKFPGPSHTESYAWPPIARGCDVVVISQCGKDPLLYLLPVLSILQTEGC
YKSLESRNGPLAVIVCPGWKKAQFIFELLGDYIASSRPLHPMLLTIGLNKDEAKNMKLPR
GCDMIVTTPHSLQRLLKYQSLLFLRLCHLILDEADILFVEANEQMLAILDNFKKYTEERE
SAPRQIVAVGVHWNKHIEHLTKEFMSDPYVVITTLKEAALYGSVQQIVHLCLESEKTSTL
LQTFDFVPSQAQKTLIFTCSEEETEMVSKVIECNSIFCLKMHSGLIYNLKSVLEQWKKKL
NSGSHIALALTDNCIPLLAITDATCVIHFSFPSSPKIFGGRLYCMSDHFQSLTEQGFSAE
QGDRKTKSVLLLTEKNASYAVGVLHYLERADAKIPPELYEFTKGLLVTKEERKARRPLCP
SLKSFGFCKNKRTCPDRHQINPEIDMPKNTSNQALPKFGYIKIIPFYIMNATKFLGRIID
KHVDLYVTLNAEMNQYFEDSSNKTVVEKVERFGLYGLAEKAVFYRVQVLEMSPNEDTCIQ
DNVLVKFIDEGKTELVKRDQLLQLPEHFHTLPPQAVEFIVCRVKPADDEVEWNPKVTRFI
HHKIIGKTHDAKVILALGNTVWIDPMVHITKLSNLKTSIIDYNVRAEILSMGMGVDNSEN
TIEQLGKLYKEAKMPDFEEYLSQISPPASAEDVADPQSTQPEDKDSEGATNSGADIQDHK
PEPLHENTKGAPMSKTAEPVRSFHPHIKWFQKDDVVILKVKLRNVRDYKCKYFQDRVVFS
AWVEDRFYLADMALQGNIIMDDSKCLIRDEEPVITLAKENRESWCSLLKQKIPNVTFDLI
TGKNAKRENHFSKVVHSKPLSFKVPEVVEDSESTSEEDESMSE
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgctcgacttgctggtgctgaagattgaagatccaggttgcttttgggttattataaag
ggatgtagtccctttttagatcatgaagttgactacaaaaaactaaatagtgccatgaac
aagttctataatggcatgtgtcaagacacagaagtaaagccactggtgttggaagaaggt
caggtctgtgtggtttattgtcaggaactaaaatgctggtgcagggctattattaagtca
attgtgtcatcagctgatcattatcaggcagagtgcttcctggtggattttgccaagtac
attccagtaaaattgaaaaacatccgagttgcaatggaaagttttttgcagcttccctac
agagcaaagaaattcagattatattgcacaaagcctgttaccttacatattgacttttgt
gaagacagtgctggaattgtaccctccaggaagtgggatagtgctgccattcagtatttc
cagagtgttatcaaagaaactacccaggtggaagccaaattatgtgctgtggaagaagat
acttttgaggtttatctttatgtaactatgaaaaatgaaaaggtatgtgttaatgacaac
ctggttgcaaagaattttgcttattacgtatcacccatggaaaataaaaaaagccttgat
tgtttggagaaaccaagaatgaatataaactcagcatcattttccagtaaactcaaccca
gcacttactctctggccaatgtttttgcaaagaacaaattgtcaagaaatgaaaagtgag
ttaacttttctggcacagtctctcccacgttcatggctcaataatgtgaacaaaggaccc
actgtcacagtcccggatcagactctgaaaaacaatacagattcattgagaaatttacct
aaaaagacacttgacgaggaacaacaatgcattcctttggaagatgtaaacaagtgtgtt
gaatcttcagtgaactggccaacaaagagaggcataaccatttatgctgagccggattta
tcagccccaagtacatcatgtcagaagccaaatgagaaatccttcagattggctgagaag
aaagaatacaatgagaagaatggctgtgtgaaattattgcagtttttgaatcctgatcct
ttgaaagctggtggaatctctgatttgcagcagttgcagaagttgaaatcaggcatgcag
cagtccttggtggtactccgaaataaggtggagccttgcttatccaatgacgtgttgccg
ctttctccacacctgaaaaagatcctccagagaaataagtttccaggaccgagccacaca
gagtcttatgcttggcctcccatagcccgtggctgcgatgtggtggtcatctctcaatgt
ggaaaggaccctttgctctacttactgccagtgctctcaattctgcaaacagagggctgc
tataagtcattagaaagtagaaacggacctctggcagtcatcgtttgccctgggtggaag
aaggcccagtttatttttgaattattgggagactacattgcatcctctaggcctcttcac
cccatgttactaacaattggactcaacaaagatgaagccaaaaacatgaagctcccaaga
gggtgtgacatgattgttacaacaccacatagcctccagagattgctcaaatatcaaagc
ttgttatttcttagactctgtcacctgattttggatgaggcagacatattatttgttgaa
gctaatgaacaaatgcttgctatactagataattttaaaaaatatactgaagaaagggag
tccgccccacgtcagattgtcgctgtgggagttcactggaacaagcacatagaacattta
accaaggagttcatgagtgacccctatgttgtcattacaaccttgaaggaggcggctctt
tatggcagcgtccagcagatagtgcatctttgcctagaaagtgaaaagacttctacattg
ctccagacttttgattttgttcccagtcaagcacaaaagaccttgatcttcacctgttct
gaagaggagacagaaatggtgtctaaggtcatagaatgcaattcaatattttgcctgaag
atgcattcgggcttgatttataacttaaagagtgttttagaacagtggaaaaagaagcta
aattctggctctcacattgcattagccttaacagataactgcattcctctcttggccatc
actgatgctacttgtgtgattcacttcagctttccttcctcgccaaaaatatttggtgga
cgcctatattgcatgtctgatcattttcagagtttaactgaacagggattttctgcagaa
caaggagacaggaaaaccaaatctgtcttgctgcttacggagaaaaatgcatcttacgca
gttggtgttctacactacctggagcgagcagatgccaagattccacctgagctctatgaa
ttcactaaaggactcctggtaaccaaagaagaaaggaaagcaaggaggcctctttgtcca
tctcttaagtcttttggtttttgcaaaaacaaaagaacctgtcctgatcgacaccagatt
aacccagaaatagacatgccaaagaacacctcaaaccaagctcttccaaaatttggatac
attaaaataattcccttttatattatgaatgcaactaaattccttggtcgtataatcgat
aaacacgtggatctttatgtaactcttaatgctgaaatgaatcagtattttgaagattcc
agtaataaaacagttgttgaaaaggtggagagatttggattatatggattggcagaaaaa
gcagttttttatagggtgcaggtgttggagatgagcccgaatgaagacacctgcatacag
gacaatgtcctagtcaagtttatagatgagggcaagactgagttggtcaaaagagaccaa
ctgctacaactcccagaacatttccacacacttcccccacaagctgtggagttcattgtg
tgcagagtaaagcctgctgacgatgaggttgaatggaacccaaaggttactagatttatt
catcacaaaattatcggaaaaactcatgatgcaaaagtgatactggctttgggaaataca
gtttggatcgatccaatggtgcacatcacaaaactttcaaacttgaaaacatctattatt
gattataatgttcgagctgaaattttgtcgatgggaatgggcgttgataattcagagaac
acaatagaacaattgggaaaattatacaaagaagctaaaatgccagactttgaagaatat
ttaagccaaatctcgcctcctgcttcagcagaagatgttgctgatcctcagagcacccag
ccagaagacaaggactcagaaggagccactaactctggggcggacatacaggaccacaag
cctgaacctttacatgaaaacactaaaggtgctcccatgagcaagacggcagagccagta
agaagcttccacccccacatcaaatggttccagaaagatgatgttgtcatcctgaaagta
aaactgagaaatgtgagagattataaatgtaaatactttcaagatagagttgttttcagt
gcctgggtggaagacagattttacttggctgacatggcactccagggcaacatcataatg
gatgactccaaatgccttattagagatgaggagcctgtaatcacgcttgcgaaagagaat
agggaatcctggtgtagcttactcaaacagaagattcctaatgtgacctttgacttgatc
actgggaagaatgcgaagagggaaaaccacttctccaaggtcgtgcattcgaaacccttg
tccttcaaagtgccagaggtagttgaggacagtgaaagcacgtcagaagaggatgaaagt
atgagtgaatga
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