Suncus etruscus (white-toothed pygmy shrew): 126028730
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Entry
126028730 CDS
T09902
Symbol
TRIM28
Name
(RefSeq) transcription intermediary factor 1-beta
KO
K08882
tripartite motif-containing protein 28 [EC:
2.3.2.27
]
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
setr01001
]
126028730 (TRIM28)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
setr04121
]
126028730 (TRIM28)
Enzymes [BR:
setr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126028730 (TRIM28)
Protein kinases [BR:
setr01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
126028730 (TRIM28)
Ubiquitin system [BR:
setr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
126028730 (TRIM28)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-B_box
ANCHR-like_BBOX
PHD
zf-B_box_Trim66
PHD-1st_NSD
YqxI
DUF7615
Motif
Other DBs
NCBI-GeneID:
126028730
NCBI-ProteinID:
XP_049643614
LinkDB
All DBs
Position
14:complement(96910428..96930237)
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AA seq
1451 aa
AA seq
DB search
MEPLNSIRQLQPGEPHCRLHWAPPPLKDPHGPITPSAPTPSEIPECHPLGLAPASLRAPL
RPRAHKGQRPAPPGASGPAGLATPHAPSSDQPRPGAPARSLPARGRAQPHLRLPRAPAGP
RRLLLATAQATLRPRRRRNPSPRGRRTRGNARPTHTSGVPASGRKTEAAARARPSSLRRR
AGAWPARLLLGLGPHRALQLCSLREGPTPRGRSRIAAGPLDSTEEEEKEEEEEEGKGQLP
KLLAPPAANKARWALGPLQSPCRGAGPGRPAPARGSRLLPQAPSPGHVLGARVQGSPGPP
DADPAGPQAGGGAGPPMLRRGAGPRFGDRARLEQRPAEQRPARTKDPRARASPPRLGAPR
CGRSPPDSPLDRPPLHPPRLASALPCAAPARAFGTRSLSPGQLRGSPPALSTALTQASET
DPDLGVRAGPPPLQAPSQPQALRPRVRSRAAGGVALVVERARSRNAACGPPSASSRTSLR
PRGRGRGGACAGGRGAGGRGLGPRPSVCASARARRRRRQLFPSRPPAAALSASGRAGERG
SERRVRGGGGGEAGAAGPERRRAVGGGAGRREASRRRRRRLAARARSRPRVRLRGAALRS
LPLPPSLPPRGRMAASAAAAAAAAASASASGSGSASGSPGAGEGPGPGAAGGDKRAAGSA
AACLGPAAPAAGANSSSSSAGDGGAAGGDGAGECGLGLGLGLGPGGRDGRRDGRARVGPG
PAPAHRRPLAVVDCPVCKQQCFSKDIVENYFMRDSGGKAAADSQDANQCCTSCEDNAPAT
SYCVECSEPLCETCVEAHQRVKYTKDHTVRSTGPAKSRDGERTVYCNVHKHEPLVLFCES
CDTLTCRDCQLNAHKDHQYQFLEDAVRNQRKLLASLVKRLGDKHATLQKNTKEVRTSIRQ
VSDVQKRVQVDVKMAILQIMKELNKRGRVLVNDAQKVTEGQQERLERQHWTMTKIQKHQE
HILRFASWALESDNNTALLLSKKLIYFQLHRALKMIVDPVEPHGEMKFQWDLNAWTKSAE
AFGKIVAERPGTNSTGPASMAPPRAPGPLSKQGSGSNQPMEVQEGYGFGSDDPYSSAEPH
VSGVKRSRSGDGEVSGLMRKVPRVSLERLDLDLTADSQPPVFKVFPGNTTEDYNLIVIER
GAASAAAGGQPGTAAPGAPGVPLPGMAIVKEEETEAAIGAPSAATEGPETKPVLMAMTEG
PGVEGPRLASPSGSTSSGLEIVALEGTSAPAGGPGALDDSATICRVCQKPGDLVMCNQCE
FCFHLECHLPALQDVPGEEWSCSLCHVLPDMKEEDSSLSLDGGDSAGVVAKLSAANQRKC
ERVLLALFCHEPCRPLHQLATDSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQD
VGRMFKQFNKLIEDKADVQSIIGLQRFFETRMNEAFGDTKFSAVLVEPPPLSLPGAGLGA
QELSSGPGGGP
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atggagcccctcaattccatccgccagctgcagccaggagaaccccactgcaggctgcat
tgggcccctccacccctcaaagacccccacgggcccatcaccccttctgctccaacaccc
tccgagatccccgagtgccaccctctggggttggcaccagcctccctccgggcccccctc
cggccccgggcgcacaagggacaaaggcccgcaccccctggggccagcgggccagcgggc
ctcgctaccccccatgcacccagctcggatcagccccggcccggggcgcccgcccgcagc
ctccccgcgcggggccgagcgcagccccacctccggctccctcgggctccggccgggccg
cggcgcctcctgctcgccaccgcccaggccacactccggccgcgtcgcaggcggaacccg
agtccgcgcggccgccgcacgcggggaaacgctaggccgacacacacttccggtgtgcct
gcttccggtcggaagactgaggcggcagcacgcgcgcgtccctcgtcgctaaggagacgg
gcgggggcgtggcccgcgcggctcctcctcggcctcggcccccaccgcgctctgcagctc
tgcagcttgcgggaaggtccgacccctagaggccggagccggattgcagccgggcctttg
gactccactgaggaggaggagaaggaggaggaggaggaggaggggaaagggcagctcccg
aagctcctcgccccgccagcagccaacaaagcccgctgggccttgggtcccctgcagagc
ccctgccggggtgcggggcccggccgccccgctccagcccgcggctcccgcctcctccct
caggccccctcgcccggccacgtcctcggcgcgcgggtgcaggggagcccggggccccca
gacgccgacccggcggggccgcaggcgggaggtggggcggggcccccgatgctgcggcga
ggggcgggaccccgatttggggaccgcgccaggctggaacaaaggcccgccgaacaaagg
cctgcccgaacaaaggacccccgggcccgcgcctcgcctccgcgcctgggcgccccaagg
tgcggccgctcgccgccggactcgcccctcgaccggcccccgcttcatcccccacgcctc
gcctctgccctgccctgcgctgccccggccagagccttcggcacccggagtctgtccccg
gggcagctccgaggcagccctccagcgttgtccaccgctctaacacaggcctcggagacg
gacccagatctcggggtgcgcgcgggcccgccccctctgcaggcgccgagtcagccgcag
gcgctcaggccgcgcgtgcgcagtcgggcggcggggggcgtggcgctcgtcgtcgagcga
gcgcgttcgaggaacgcagcgtgcggcccgccctcggcctcctcgcggacgtccctgagg
ccgcgggggcggggccggggcggcgcctgcgccgggggccgcggcgccgggggtcgcggg
ctcgggccccgcccctccgtgtgcgccagcgcgcgtgcgcgtcggcgtcggcgccagtta
tttccgtcccgccccccggccgcggctctttctgcgagcgggcgcgcgggcgagcggggc
tccgagcgccgtgtgcgcggcggcggcggcggcgaggccggcgcggcgggtcccgagagg
cggcgcgcggtgggcggcggcgcggggcggcgcgaggcctcgcggcggcggcggcggcgg
ttggcggcgcgcgctcggtcccggccccgtgtgcgcctgcgcggcgcggcgctccgctcc
ctccccctccctccctcccttcctccccgcgggcgaatggcggcctcggcggcggcggcg
gcggcggcggcggcctcggcctcggcctcgggctcgggctcggcctcgggcagccccggc
gcgggcgagggcccgggcccgggcgcggcgggcggcgacaagcgggcggcgggctcggcg
gccgcctgcctcgggcccgccgcgcccgccgccggcgccaacagcagcagcagcagcgcg
ggggacggcggggccgcgggcggcgacggcgcgggtgagtgcggcctgggcctgggcctg
ggcctcggcccgggagggagggacggacggagggacgggagggcgcgggtgggtcctggt
cccgccccggctcaccgccgccccctcgcagtggtggactgccccgtgtgcaagcagcag
tgcttttccaaggacatcgtggagaactacttcatgcgcgacagcggcggcaaggcggcg
gccgactcgcaggacgccaaccagtgctgcacgagctgcgaggacaacgcgcccgccacc
agctactgcgtggagtgctccgagccgctgtgcgagacgtgcgtggaggcgcaccagcgg
gtcaagtacaccaaggaccacaccgtgcgctccaccggaccagctaaatccagggatggt
gagcgcaccgtgtactgcaatgtgcataagcatgagccccttgtactgttctgtgagagc
tgcgacacactcacttgtcgggactgccagcttaatgcccacaaagaccaccagtatcag
ttcttggaggatgcggtgaggaaccaacgaaaacttctggcctccttggtgaagcgtctt
ggggacaaacatgccacactgcagaagaataccaaggaggttcgcacctcaattcgtcaa
gtgtctgatgtacagaaacgcgtgcaggtggatgtaaagatggcgatcctgcaaattatg
aaggagttgaataagcggggccgtgtgctggtcaatgatgcccagaaggtgactgagggg
cagcaagaacgtctggagaggcagcattggaccatgaccaagatccagaagcaccaagaa
cacattctgcgctttgcttcatgggctctggagagtgacaacaacacagcgttactgctg
tccaagaaactgatctacttccagttgcaccgggccctcaagatgattgtggaccccgtg
gagccccatggtgagatgaaattccagtgggacctgaatgcctggacaaagagcgcagag
gcctttggcaagattgtggcagagcgtcctggcaccaattcaacaggcccagcatccatg
gccccacctcgggctccagggcccttaagcaagcagggctctggcagcaatcagcctatg
gaggtgcaggaaggatacggctttgggtcagatgacccttactccagcgcagagcctcat
gtttctggcgtgaagcggtcccgctcaggcgatggggaagtgagtggcctcatgcgcaag
gtgccaagggtgagccttgagcgcctggacctggacctcactgctgacagccagccccca
gtcttcaaggtcttcccgggcaacaccactgaggattacaacctcatcgtcatcgagcgt
ggtgctgcttctgctgctgctggaggccagcctgggactgctgcccctggggccccgggg
gtccccctacccggcatggccattgtcaaggaagaagagacagaggctgccatcggagcc
ccatcggctgccactgagggaccagaaaccaaaccagtgctgatggctatgactgagggg
cctggcgttgaaggccctcgcctggcctcccccagtggtagcaccagttcaggcctggag
atagtggctctagagggtacctcagcaccagctggtgggcctggtgccctggatgacagc
gctacaatctgtcgtgtctgccagaagccgggtgacctggtcatgtgcaaccagtgtgaa
ttctgcttccacctggaatgccacttgcctgcactgcaggacgtgccaggcgaggaatgg
agttgttctctttgccacgtgctgcctgacatgaaggaggaggacagcagcttgagtctg
gatggtggagacagcgctggggtagtggctaaactctcagcagccaaccagcggaagtgt
gagcgtgtcctcctggccctgttctgtcatgaaccttgccggcccttgcaccaactggct
actgattctaccttctccctggatcagccaggtggcaccttggatctcacactcatccgc
gcccgtctgcaggaaaagttgtcacccccttacagttccccccaagagtttgcccaggat
gtgggccgcatgttcaagcagttcaacaaactaatagaggataaggcagatgtgcagtcc
atcatcggtctgcagcgcttcttcgagactcgcatgaatgaggcctttggcgataccaag
ttttctgctgtgctggtggagccaccacccctgagcctgcctggtgctggcctgggagcc
caggagctgtccagtggccctgggggtggcccctga
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