Suncus etruscus (white-toothed pygmy shrew): 126029513
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Entry
126029513 CDS
T09902
Symbol
ATXN2L
Name
(RefSeq) ataxin-2-like protein isoform X1
KO
K23625
ataxin 2/2L
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr05014
Amyotrophic lateral sclerosis
setr05017
Spinocerebellar ataxia
setr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
126029513 (ATXN2L)
05017 Spinocerebellar ataxia
126029513 (ATXN2L)
05022 Pathways of neurodegeneration - multiple diseases
126029513 (ATXN2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126029513 (ATXN2L)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126029513 (ATXN2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SM-ATX
LsmAD
PAM2
DUF5415
Motif
Other DBs
NCBI-GeneID:
126029513
NCBI-ProteinID:
XP_049643743
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All DBs
Position
15:60717443..60736515
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AA seq
1123 aa
AA seq
DB search
MLKPQPPQQTPPPQPPLPAQQQQAAARRPPGGSSPPNGGLPGPLIAGAAAASAAPGPPAA
VSAPCLGPPAAAALAAAAAGSGLRRGPDALLAPQPPPTAPTPAAPHPERPGAAAVGSARG
QSTGKGPPQLPVFDGVYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVD
AVHRKASEPVGGPRREDIVDTMIFKPNDVMLVHFRNVDFNYATKDKFTDSAIAMNSKVNG
EHKEKVLQRWEGGDSNSDDYDLESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYTVPL
EKDNSEEFRQRELRAAQLAREIESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSGRESPS
LASREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGPGSETRGI
NGGPSRMSPKAQRPLRGAKTLSSPSSRPSGEASVPPPPAALPFLAVGRMYPPRSPKSAAP
APISASCPEPPIGSAVPTSSASIPVTSSIVDPGVGAISPASPKISLAPTDVKELQAKESG
RTLESQELSRIAGKVPGIQNEQKRFQLEELRKFGAQFKLQSSSSPETSLDPFPPRILKEE
IKGKEKEVDGLLTSEPIGSPVSSKTDSVLDKEDKPPLPSAGGTEGSEQPPPPCPSQTGSP
PVGLIKGDDKDDGPVAEQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSPGPRTHSTPSI
PVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGKYRGAKGSLPPQR
SDQHQPASAPPMMQAAAAAGPPLVAATPYSSYIPYNPQQFPGQPAMMQPMAHYPSQPVFA
PMLQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVHQSYPHHATQLHAHQPQP
ATTPTGSQPQSQHAAPSPVQHQAGQAPHLGSGQPQQNLYHPGALTGTPPSLPPGPSAQSP
QSSFPQPAAVYAIHAHQQLPHGFTNMAHVTQAHVQTGITAAPPPHPGAPHPPQVMLLHPP
QSHGGPPQGAVPQSGVPALSASTPSPYPYIGHPQGEQPGQAPGFPGGADDRILCRVGRSH
SRRRQGLAPGSVLCFPPSSLSCDPAAPLPTASPALSDPDCLLT
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagccgcagccgccgcaacagacgcccccgccgcagccgccgctccccgcgcag
cagcaacaggccgcggcccgccggcctcccgggggcagcagcccgcccaacggcggcctc
ccggggcccctgatcgccggcgccgccgccgcctcggccgctcccgggccgcccgccgcc
gtgtccgcgccctgcctggggccgcccgccgccgccgccctcgccgccgccgcggccggg
agcgggctccgccgcggccccgacgcgctcttggcgccgcagccgccgccgaccgcgccg
acgccggcagcgccgcatcccgagaggccgggggccgcggccgtcggcagcgccaggggg
caaagcactggaaagggtcccccacaattaccggtgtttgacggtgtctacaacaattcc
agaatgttgcattttcttacagctgtagtgggctctacttgtgatgtaaaggtgaaaaat
ggtaccacgtatgaaggtatcttcaaaactcttagctctaagtttgaactagcagtcgat
gctgtgcaccggaaagcatctgagccagtgggtggccctcgtcgagaagatattgtagat
accatgatattcaagccaaatgatgtcatgctcgtgcacttccgaaatgttgatttcaat
tatgctactaaagacaagttcactgattcagccattgccatgaattcgaaggtgaatgga
gagcataaagagaaggtgcttcagcgctgggaggggggtgacagcaacagtgatgactac
gacctggaatctgatatgtccaatggatgggaccccaatgaaatgttcaagttcaatgag
gagaactacggtgtgaagaccacttatgatagcagtctctcttcttacacggtgccctta
gaaaaagacaactctgaagaatttcgtcagcgggagctacgtgcagcccaattagctcga
gagattgaatccagcccccaatatcgcctgcggattgccatggagaatgacgatgggcgc
actgaagaggaaaagcatagtgcagtccagcgccagggttctgggcgggagagccccagc
ttggcatccagggaaggaaaatatatccctctaccccagcgagttcgggaaggtccaagg
ggaggagttcgatgcagtagttctcggggtggccggcctggacttagctccttgccacct
cgtggccctcaccatctagacaacagcagccctggcccaggttctgaaacacgcggtatt
aatggaggcccttcccgcatgtctcctaaggcacagcggcctctgagaggtgccaagaca
ctgtcttcacccagcagtaggccttctggagaagcttctgttccaccacctcctgcagct
ctcccttttcttgcagtgggccggatgtacccgcctcgttctcccaaatctgctgccccg
gccccaatctcagcttcctgtcctgaacctccaattggttcagcagtaccaacctcttca
gcttccatccctgtaacatcatcgatcgtggatcccggagtaggtgccatttccccggca
tctccaaagatctcactggcccccacagatgtgaaagaactacaagccaaggaatctggt
agaactctggagtcccaggaattgtctcggatagctggaaaagtccctggtattcaaaat
gaacaaaaacgctttcagttggaagagctgagaaagtttggggctcagtttaagcttcaa
tccagtagttcccctgagaccagtttggatccttttcctcctcggatcttaaaggaagag
atcaaagggaaggagaaggaggttgatggactgttgacttcagaacctataggatctcca
gtctcctccaagacagactctgtattggataaggaggataaaccacctttgccatcagct
ggaggcactgaggggtcagaacaacccccaccaccttgcccaagccagaccggcagcccc
ccagtgggccttatcaagggagatgacaaggatgacggccctgttgctgaacaagtgaag
aaatcaacattgaatcctaatgccaaggagtttaatcctacaaagcctctgctttctgtg
aataaatccactagtaccccaacttctccgggaccccggactcattcaactccttccatc
ccggtgctgacagcaggccagagtggactgtatagcccccagtacatttcctacatacct
cagatccacatgggaccagctgttcaggcaccacagatgtatccatatcctgtatccaac
tcagtgcctggacagcagggcaagtaccggggagcaaaaggctccctgccccctcagcgc
tcggaccaacaccagccagcttcagcacctccaatgatgcaggcagcagctgctgctggt
ccacctctggtggctgccactccttactcttcttacatcccttacaacccacagcagttc
ccaggccagccagccatgatgcagcctatggcccactatccctcacagccggtgtttgcc
cccatgcttcaaagcaatccacgcatgctgacttctgggagtcatccccaggccattgtg
tcctcctctactcctcaatacccttctgcagagcagcccactccccaagccctttatgcc
actgttcaccagtcctatccacaccatgccacacagctccatgctcaccagccgcagccg
gccaccacacctactgggagccagccacagtcccagcatgcggcccctagtcctgtccag
caccaggcggggcaggccccacacctgggcagtggacaaccacagcagaatctgtaccac
ccaggggccctgacaggcacaccgccttctctgccaccgggaccttctgcccagtcccct
cagagcagctttccccaaccagccgctgtgtatgccatccatgctcatcagcagctgccc
cacggcttcaccaatatggcccatgttacccaggcccatgtccaaactggaatcacagca
gccccgccccctcaccctggggctccccacccgccccaggtgatgctgctgcacccaccc
cagagccatgggggccccccccaaggcgcggtgccccagagtggggtgcctgcactatca
gcttccacaccctcaccctacccctacatcggacacccccaaggtgagcagcccggccag
gcgcctggatttccaggaggagccgatgacaggattctatgtagggtgggcagaagccac
agtcgccgccgccaggggcttgctcctggctctgtcctttgcttccctccgtcctcgctc
agttgtgatccagcagcccccctccccactgcctccccagctctcagtgaccccgactgt
ctcctgacttag
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