Suncus etruscus (white-toothed pygmy shrew): 126029700
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Entry
126029700 CDS
T09902
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03015
mRNA surveillance pathway
setr05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126029700 (HBS1L)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
126029700 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126029700 (HBS1L)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126029700 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
126029700
NCBI-ProteinID:
XP_049643973
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Position
15:complement(2859780..2956829)
Genome browser
AA seq
678 aa
AA seq
DB search
MARHRSVRGYDYGEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPSEEYDYEGLKES
SNFHLSHQLSEIDQARLYSCLDHMREILGDAVPDDTLIEAILKNKFDVQKALSVVLEKDK
VQHLKVKNEEAVSTEEIAKGKSVGCQLSRNEPEIVPKVAKMTVSGKKPTMGFEVPGLTTE
ENGHRFHAPQKGHHGEDASITSDALGTKSALPSHTVQTSEEQSPTPASLKKSGKLRQQID
IKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLFLLGNVNKRTMHKYEQESKKAGKAS
FAYAWVLDETGEERERGVTMDVGMTKFETTSKVITLMDAPGHKDFIPNMITGAAQADVAV
LVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEITGKLG
HFLKQAGFKESDVAFIPTSGLSGENLVTRSQSSELTKWYKGLCLLEQIDSFKSPQRSVDK
PFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVDWAAA
GDHVNLTLVGMDIIKINVGCIFCGPKEPIKACTRFRARILIFNIEIPVTKGFPVLLHYQT
VSEPAVIKRLISVLSKSTGEVTKKKPKLLTKGQNAIIELQTQRPVALELYKDFKELGRFM
LRYGGSTIAAGVVTEIKE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcaccgcagcgtccgcggctacgactacggcgaagattttgaagacgatgat
ctctatggccaatctgtagaggatgattattgtatttcgccctcaacagctgctcagttt
atttattcccgacgtgacaacccttcagaagaatacgattatgaaggtttgaaagagtct
tccaatttccatttgagtcatcaattaagtgaaattgaccaagcccgtctttattcttgc
cttgatcacatgagagagatacttggagatgctgtgccagatgacacattgattgaagca
attctgaagaacaagtttgatgtacagaaggccttgtcagtggttctagaaaaagataaa
gtacaacatttgaaggtcaagaatgaagaagcagtctctacagaagagatagcaaaagga
aaatccgtaggttgccagttatctcgaaatgaacctgaaattgtgccaaaagttgctaaa
atgactgtttctggaaagaagccaactatgggatttgaagtacctggactgacaactgaa
gaaaatggtcatcgttttcatgcacctcaaaaaggacatcatggtgaagatgccagcatc
acttctgatgctcttgggactaaatcagctcttccatcccacaccgttcaaacatcagaa
gagcaaagtccaacaccagcatcactgaaaaagtctggcaaactgaggcaacagatagat
atcaaagctgaactggagaagcggcaaggagggaagcagctcctcaacttggtggtcatt
ggtcatgttgatgccgggaaaagtactttgatgggccatatgctttttctgctgggtaat
gtaaacaaaagaactatgcataagtacgagcaagagtctaagaaggctggcaaggcttcg
ttcgcatatgcgtgggtcttggatgagactggcgaagaaagggaaaggggagtaacaatg
gatgttggtatgacaaagtttgagactacaagcaaagtcattacattaatggatgctcct
ggccataaggatttcattccaaatatgattacaggagcagctcaggcagatgtagctgtt
ttagttgtggatgccagtaggggagaattcgaagctggatttgaaactggaggacaaaca
cgagaacatggcctcttggttcgttctcttggagtcacacaacttgcagttgctgtgaat
aaaatggatcaggttaattggcagcaagaaagatttcaagagattactggaaaacttgga
cacttccttaagcaagcaggatttaaggaaagtgatgtagcttttattcctacaagtggt
ctcagtggtgaaaatctagtaacaagatctcaatcaagtgagctcacaaaatggtataaa
ggactatgtttattagagcaaattgattccttcaagtctccccaaagatctgttgataag
ccttttcgtttatgtgtatctgatgttttcaaagatcaaggatctggattttgtgtaact
ggtaaaattgaagctggttatatccaaactggtgaccgactactagcaatgcctcctaat
gaaacttgtactgcaaaaggaattactctgcacgacgaacctgttgattgggcggcagca
ggggatcatgttaatcttacattagttggaatggatatcatcaaaatcaatgttggctgc
atattttgtggccccaaagaacccattaaagcttgcacacgtttccgagcccgtattctc
atctttaatattgaaattcctgtcactaaaggatttcctgtcctgttacactaccagact
gtcagtgaacctgctgttattaaacgattgattagtgtcttaagtaaaagcacaggtgaa
gttacaaagaaaaagcccaaattactgactaaaggccagaacgcaatcatagagctacag
acacaaaggccagttgcccttgagctctacaaagattttaaagagctgggaaggtttatg
ctgcgttacggtggttccacgatagctgctggtgttgtcacagagataaaagaatga
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