KEGG   Suncus etruscus (white-toothed pygmy shrew): 126030043
Entry
126030043         CDS       T09902                                 
Symbol
LSM7
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03018  RNA degradation
setr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126030043 (LSM7)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126030043 (LSM7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:setr03019]
    126030043 (LSM7)
   03041 Spliceosome [BR:setr03041]
    126030043 (LSM7)
Messenger RNA biogenesis [BR:setr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     126030043 (LSM7)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     126030043 (LSM7)
Spliceosome [BR:setr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    126030043 (LSM7)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 126030043
NCBI-ProteinID: XP_049644206
LinkDB
Position
15:complement(83815134..83819684)
AA seq 181 aa
MSAAAVSRCFPATPLRAALRRRGAAGQRLAARAPARTGSRLRRTALQDGGERAAAAAGDS
RRESRGRAPLSASRALLPPQDKEKKKKESILDLSKYIDKTIRVKFQGGREASGILKGFDP
LLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQE
A
NT seq 546 nt   +upstreamnt  +downstreamnt
atgtccgccgcggctgtcagcagatgtttcccagcaacgcccctgcgcgcggctctgcgc
aggcgcggcgcggcgggtcaaaggttagcagccagagcgcctgcgcggacgggctcgcgc
ctgcgcagaacagcgctgcaagatggcggtgagcgtgcggcagccgcggcgggagactca
aggcgggagtcgcggggtcgggccccgctctcggcctcacgcgctctgcttcccccgcag
gacaaagagaagaagaagaaggagagtatcttggacctgtccaagtacatcgacaagacc
atccgggtgaagtttcaggggggccgcgaagccagtggaattctgaagggattcgaccca
ctcctcaacctcgtgctggatggaaccattgagtacatgagagaccctgatgaccagtac
aagctgacggaggacactcggcaactggggctggtggtgtgccgcggaacgtcagtggtg
ctcatctgcccacaggacggcatggaggccatccccaaccccttcatccagcagcaggag
gcctag

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