Suncus etruscus (white-toothed pygmy shrew): 126030075
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Entry
126030075 CDS
T09902
Symbol
XAB2
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126030075 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126030075 (XAB2)
03041 Spliceosome [BR:
setr03041
]
126030075 (XAB2)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126030075 (XAB2)
Spliceosome [BR:
setr03041
]
Complex B
Other components
Prp19-related factors
126030075 (XAB2)
Complex C
126030075 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
Suf
TPR_2
TPR_8
ARM_TT21_C
ARM_TT21
TPR_NPHP3
DUF5575_C
Motif
Other DBs
NCBI-GeneID:
126030075
NCBI-ProteinID:
XP_049644231
LinkDB
All DBs
Position
15:complement(85619495..85628755)
Genome browser
AA seq
1017 aa
AA seq
DB search
MGWVLCIWHPSPLQISILWVSLTRNTSISPPSRQLPTCQSRFRPSAPSSPTFQQGSQFIG
ISRFLRLQLIGSKDRFLPRENGGDGRGRRVPTFGDLVFFGVHYRAGGGDSDACMDLALLQ
PLEAKRSWGGKRERARRERRRRDAELKISEFRKGLKGPAVSDFPGKVSLAGSERYNLGEE
EDLPYEEEIMRNQFSVKCWLRYIEFKQGAPRPNXHQLYERALKLLPCTTNCGYRYLKARR
AQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRA
LPITQHSRIWPLYLRFLRSHPLPETAVRGYRQLILKVSPESAEEFIEYLKSSDRLDEAAQ
RXATVVNDSASCPKAGKSNYQLWHELCDLISQXPDKVQALNVDAIIRGGPHTFHRPLGKL
WCSLADYYIRSGTFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKMETASELG
REEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPPRGIINT
YTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVSFKQVDDLASVWC
ECGELELRHESYDQALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESL
GTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSTFW
STYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYE
RATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECK
LGEIDRARAIYSFCSQICDPRTTGAFWQTWKEFEVRHGNEDTIREMLRIRRSVQATYNTQ
VNFMASQMLKVSASATGTVSDLAPGQSGLDDMKLLEQRAEQLAAEAERDQPARAQNKILF
VRSDASREELAQLAQQANPEEIELDEDEDDEMDLEPNEVRLEQQSVPAAVFGSLKED
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atggggtgggtgctctgtatttggcatccctcccctcttcagatctctattctgtgggtt
tcactgacccgaaacacctccatttcacccccatctcggcagctcccaacctgccagagt
cgcttccgcccctccgccccttccagccccaccttccagcaaggctcccagttcattggg
atttcgcggtttctacggctgcagctgattgggtcgaaagatcgttttctcccccgggaa
aatggtggtgatgggcgcggtcgtcgcgtcccgacgttcggcgacctcgtttttttcggg
gtgcactaccgggccggaggcggggacagtgatgcctgcatggacttggcgctgctgcag
cccttggaggcgaagcgatcctggggtgggaaaagggagcgggctaggagggagaggaga
aggagagacgccgagctaaaaatctcagagtttagaaaagggttaaaggggcctgcagtt
tccgatttcccggggaaagtctctttggcggggtccgaacgttataatctgggggaggaa
gaggacctcccctatgaggaggaaattatgcggaaccagttctctgtcaagtgctggctt
cgctacatcgagttcaagcagggtgccccgaggcccaacnntcaccagctgtatgagcgt
gcactcaaactactgccctgcactacaaactgtgggtacagatacctgaaggcccgccgg
gcacaagtcaagcaccgctgtgtcaccgaccctgcctacgaggacgtcaacaactgccat
gagagagccttcgtgttcatgcacaagatgcctcgtctttggctggactattgccagttc
ctcatggaccagggtcgggtcacgcacacacgtcgcacctttgatcgtgcactgcgggcg
ctccccatcacgcagcactcccgtatctggcccctgtatctgcgcttcctgcgctcacac
ccactgcctgagacggctgtgcggggctaccggcagctaatcctcaaggtaagccctgag
agtgccgaggagtttatcgagtacctcaagtccagtgaccggctggacgaggcggcccag
cgcnctgccactgtggttaatgatagcgcttcgtgtccaaaagccggaaagtccaactac
caactctggcacgagctctgcgacctcatctcgcagnaacctgacaaggtgcaggctcta
aacgtggatgcgatcatccggggcggccctcacacgtttcacagaccactgggcaagctc
tggtgctcattggctgactactacatccgcagtgggacttttgagaaggcgcgggacgtg
tacgaggaggccatccgaaccgtgatgaccgtgcgcgacttcacacaagtgttcgacagc
tatgcacagttcgaggagagcatgattgctgccaaaatggagacagcgtcagagttgggc
cgagaggaggaggacgatgtggatctagagctgcgcctggcccgcttcgagcagctcatc
tcgaggcggccactgctactgaacagcgtcctgctgcgccagaacccgcaccatgtgcat
gagtggcacaagcgcgtggccctgcatcagggccgacctccgcgaggtatcatcaacact
tacacggaggctgtgcagaccgtggaccccttcaaagccaccggcaaaccgcacacgctc
tgggtggccttcgccaagttctatgaggataatggacagctggacgacgcccgtgtcatc
ctggagaaagccaccaaggtgagcttcaagcaggtggatgacctggccagcgtgtggtgc
gagtgtggcgagctggagctgcggcatgagagctatgaccaggccctgcggctgctgagg
aaggccacagcactgcccgcacgccgtgccgagtactttgatggctcggagccggtgcag
aatcgcgtgtacaagtccctgaaggtgtggtccatgctggctgatctggaggagagtctg
ggtaccttccagtccaccaaggcggtgtatgaccgcatcctggacctgcgcatcgccacc
ccacagatcgtcatcaattacgccatgttcctggaggagcacaagtacttcgaggagagc
ttcaaggcctacgagcgcggcatctcgctgttcaagtggcccaacgtatcgacattctgg
agcacctacctgaccaagtttattgcccgctacggtggccgtaagttggagcgcgctagg
gacctcttcgagcaggcgctggacggctgcccccctaagtatgccaaaacgctctacctg
ctgtatgcacagctggaggaggagtgggggctggcacggcacgccatggccgtgtacgag
cgtgccacccgtgctgtggagcccgctcagcagtacgacatgttcaacatctacatcaag
cgcgccgccgagatctatggcgttacgcacacgcgtggcatctaccagaaggccattgag
gtgctgtcggatgagcatgcccgagagatgtgcctgcgcttcgctgatatggaatgtaaa
cttggcgagatcgaccgtgcccgtgccatctacagcttctgttcacagatctgtgacccc
cggaccactggggcattctggcagacgtggaaggagttcgaggtgcgtcacggcaacgag
gacacgatccgtgagatgctgcggatccgccgcagtgtgcaagccacatataacacgcag
gtcaacttcatggcctcacagatgctcaaagtgtcagccagcgccacgggcacagtgtcc
gacctggcccctggacaaagcggcctggatgacatgaagttgcttgagcagcgggcggag
cagctggcagctgaggccgagcgagaccagcccgcacgggcccaaaacaagatcctgttt
gtgaggagcgacgcgtcccgtgaggagctggcacagctggcccagcaggccaaccccgag
gagattgaactggatgaggacgaggatgacgagatggatctggagcccaacgaggtgcgg
ttggagcagcagagtgtgccggccgccgtgttcgggagcctgaaggaagactga
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