KEGG   Suncus etruscus (white-toothed pygmy shrew): 126031312
Entry
126031312         CDS       T09902                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB4-like
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
setr  Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03020  RNA polymerase
setr03420  Nucleotide excision repair
setr05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:setr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    126031312
  09124 Replication and repair
   03420 Nucleotide excision repair
    126031312
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    126031312
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:setr03021]
    126031312
   03400 DNA repair and recombination proteins [BR:setr03400]
    126031312
Transcription machinery [BR:setr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     126031312
DNA repair and recombination proteins [BR:setr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      126031312
SSDB
Motif
Pfam: RNA_pol_Rpb4 SPATA6
Other DBs
NCBI-GeneID: 126031312
NCBI-ProteinID: XP_049645550
LinkDB
Position
15:25064550..25069371
AA seq 177 aa
MQENDKKEEVGRERARKRHEISIELLDEQLLKQEMEVLTARGSSWSAGHVEDTSQLIFPK
DETAETLLNSEVQMLLEHWKQQMESAEVEQELPEVFXKSFTYTGHFSHFKNRENIASIRS
LLLQNRLHKFELACLANLCPETAEEAKALIPSLEGWFEEEKLQQILDAIQTRHSFQY
NT seq 534 nt   +upstreamnt  +downstreamnt
atgcaagagaatgacaagaaagaggaggttgggcgggagcgggctcgaaaaaggcatgaa
ataagtatcgagctcctggatgagcagcttctcaagcaagagatggaagtgctcacagca
cgtgggagcagctggagtgctggccatgtagaagatacttcccagctcatctttcccaaa
gatgaaacagctgagactcttctcaattcagaagttcagatgcttttggagcattggaag
cagcagatggagagtgctgaggttgaacaagaacttcctgaggtcttcntaaaaagtttc
acctatacaggccatttcagtcatttcaaaaatagagagaacattgccagtattcgtagc
ttattgctacagaataggcttcataagtttgagttggcatgtttagccaacctttgccca
gaaacagctgaggaggccaaggctctaatcccaagccttgaggggtggtttgaagaggag
aagctacagcagattcttgatgccatccagactagacacagcttccagtattaa

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