Suncus etruscus (white-toothed pygmy shrew): 126032013
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Entry
126032013 CDS
T09902
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr05016
Huntington disease
setr05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
126032013 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
126032013 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126032013 (HTT)
04131 Membrane trafficking [BR:
setr04131
]
126032013 (HTT)
03029 Mitochondrial biogenesis [BR:
setr03029
]
126032013 (HTT)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126032013 (HTT)
Membrane trafficking [BR:
setr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
126032013 (HTT)
Mitochondrial biogenesis [BR:
setr03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
126032013 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
SP24
Motif
Other DBs
NCBI-GeneID:
126032013
NCBI-ProteinID:
XP_049645651
LinkDB
All DBs
Position
16:86420255..86541978
Genome browser
AA seq
3111 aa
AA seq
DB search
MATLEKLMRAFESLKSFQQQQPPPPPPPPPQSQSQSQSSRLPPASASPPPPPPPPPPPPP
GPAGPEEPLQRPKKELLATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCS
DDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHL
VRPQKCRPYLVNLLPCLTHTSKRPEESVQETLAAAIPKIMASFGNFANDNEIKVLLKAFI
ANLHANSPTVRRTAAGAVVSICQYSRRTQYFYSWLLSVLLGLLVPIEDGHSTLLILGVLL
TLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYKLALHYTQHQDHNVVTGA
LELLQQLLRTPPPELLVTLTMAGGWGQLVGAKDEWDCRSRSGSIVELIIGGGSSCSPMLS
RKQKGKVLLGEAAALEDDSESRSEGSSPAFAASVKGETSGELAAPTGLSTPGSTDSALHD
IITEQPRAQHTLQPDSMDLSTATNGDEEDILSPSSSQISTVPSDPTLDLNDGTQASSPIS
ESSQTTTEGPDSAITPSDSSEIVLDGVDGQYLGISQPEDEDISDEASDAFRGSSLALQQA
RLLDSSGHSRQSSDSSVERFLCREDAPEAGKLENKPCRIKGNIGQSTDDDSPPLVHCVRL
LSASFLLTGEKKALVPDRDVRVSVKALALSCVGAAVALHPEAFFSKLYKVPLDRTEYPEE
QYVSDVLNYIDHGDPQVRGATALLCGTLICSVLKRSRFHVGHWTSNIRMLTGNSFSLVDC
IPLLQKTLKDESSVTCKLACTAVRHCVMSLCSSCYSALGLQLLTDVLSLRNSSYWLVRTE
LLEILAEIDFRLVSFLEAKADRLHRGAHHYTGLLNLQERVLDNVVIYLLGDEDPRVRHVA
AATLVKLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPSCHFSVSTVTRIYRGY
NLLPSITDVTIENNLSRVIAMVSRGLITSTTRALTFGCCEALCLLSTAFPICIWSLGWHC
GVPLLSASIESRKSCTIGMAPMILTLLSSAWFPLDLSAHQDALILTGNLLAASAPKSLRN
SWSSEDEAASGRQEEVWPALGDRSLVPMVEQLFSHLLKVINICAHVLDDVTPGPALKAAL
PSLTNPPSLSPIRRKGKEKESVESASVPQSPKKGSEASPAFRQSDVSGTAPANKSSSLGS
FYHLPSYLKLHDVLKATHANYKVTLDLQNTSEKFGSFLRAALDVLAQILELATLQDIGKC
VEEILGYLKSCFNREPTMATVCVQQLLKTLFGTNLASQFEGLSTNPSKCQSRTQRLGSSS
VRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQDHDPSGWFDVLQKVSTQLKSNLTGVS
KIRADKNAIHSHIRLFEPLVIKALKQYTTTTSVRLQRQVLDLLAQLVQLRVNYCLLDSDQ
VFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQLCDGIMA
SGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVVEMFI
LVLQQCHKENEDKWKRLSRQVADVVLPMLARQQMHIDSHEALGVVNTLFEILAPASLRPV
DMLLRSMFVTPDTMSSVSTVQLWIAGILSILRVLISQSTEDIVLSRIQELSLSPCFISCP
VINRLREGDQSPVPEEHGEGRQPKSLPEEMFARFLLQLVGILLEDIGTKQLRVDMSEQQH
TFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTVTGTDSTFYGLESLNACVRAMAPTH
PALVLLWCQVLLLVSHTDYRWWAEVQQTPKRRSLSSMKTLGLQLSGDEDIDSAARLGVCN
QEIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLISLSHEPPVQDFISAIHRNSAAS
GLFIQAIQSRCDNLASPATLKKTLQCLEGIHLSQSGAVLTLYVDKLLCTPLRVLARMVDT
LACRRVEMLLAANLQSSAAQLPGEEVNRIQEHLQSSGLAQRHQRLYSLLDRLRLTAAPSS
LGPAPPLTSHPLDGEGLLALETVNPDKDWYIRLVKSQCWTRSDSALLEGAELVSGIPAGD
LSPFMMAPEFNVSLLAPCLGLGLREISGGQKSPLFEAAQMVTLERVASMVQQLPAVHQVF
QPFLPVEPNAYWNKLDDLFGDTALYCSLTTLARALAQYLLAASKLPGHLHLPPEREGDIV
KFVVMVLEALAWHLVHERIPMSLDLQAGLDCCCLALQLPRLWNVASSPEMVTHTCSLIHC
VRCLLEAIVVQPGDQLLSPDRTDIPHTVGANVNASVQTPGYVVAACAMMAEMVESLPSVL
ALGHQRSSSVPAFLTPVLRNIVVSLARLPLVNSYTRVPPLVWKLGWSPRPGGDFGTLYPE
IPVEFLQEKEVLKDFIYRVNTLGWTSRTQFEETWASLLGVLVTQPLVMEQEESPPEEDTE
RTQINVLAVQAISSLVLSAMTVPVAGNPAVSCLEQQPRSKPLKALDTRFGRKLSIIRGIV
EQEIQAMVSKRENLATHHLYQAWDPIPSLSPATTGVLISHDNLLLQTNPERELGDMSYQL
GQVSIHSVWLGNNITPLRVEEWEEEEEEEEEATDTPTPASPPTSPINSRKHRAGVDIHSC
SQFLLELYTRWILPSSSARKMPVILISEVVRSLLVVSDLFTERSQFEMMYSTLMELRRVH
PVEDEILLQYLVPATCKAAAVLGMDKAVAEPVSRLLESALRSGHLPSKIGALHGILYVLE
CDLLDDTAKQLVPLVSDYVLTTLKAVAPCVNIHSQWHVLVTCATAFYLIENYPLDVGPDF
SASVIQLCGVMLSASEEATPSSVYHCVLRGLERLLLSEQLSRLDAESLVKLSVDRINVHS
PHRALAALGLMLTCMYTGKEKMSPGRASAPSPTAPDSESVIVAMERVSVLFDRIRKGFPC
EARVAARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHNSGQSSM
VRDWVMLSLSNFTQRTPVAMAVWSLSCFFISASTSPWVSAILPHVVSRMGKLEQVDVSLF
CLVATDFYRRQIEEELDRRAFQSVFEVVAGPGSPYQRLLTCLQKLHKDSTC
NT seq
9336 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggagaagctcatgcgggccttcgagtccctcaagtcgttccagcagcag
cagccgccgcctccgccgccgccgccgccgcagtcgcagtcgcagtcgcagtcgtctcgg
cttcccccggcgtcggcgtcgccgccgccgccgccgcccccgcccccgccgccgcctccg
ggcccggccgggcccgaggagccgctgcagcgaccaaagaaagaactcttggctaccaag
aaagaccgtgtgaaccactgtctgacaatatgtgagaacatagtggcacaatctctcaga
aattctccagaatttcagaagctcctgggcattgccatggagctcttcctgctgtgtagt
gatgacgccgagtcagatgtgaggatggtggctgatgaatgtctcaacaaagtcataaag
gcgctgatggactccaacctcccacggctacagctcgagctttataaggaaataaaaaag
aatggcgctcctcggagcctgcgtgctgccctgtggaggtttgctgagctggcacacctg
gtccggccccagaaatgcaggccatacctggtcaacctattgccttgtctgactcacaca
agcaagagacctgaggagtctgttcaggagaccttggctgcagcaatccccaagattatg
gcttcctttggcaactttgcgaatgacaatgaaattaaggttttgttgaaggctttcatc
gctaacttgcatgccaattccccgactgtacggcgcaccgcggctggtgctgttgtcagc
atttgccagtactcccggaggacacagtacttctacagctggctgctcagtgtgctcctg
ggcttgcttgttcccattgaggatggacactccacacttctcattctcggggtgctgctc
acactgaggtatttggtacccctactgcagcagcaggtcaaggataccagcttgaaaggc
agctttggggtgacacggaaggaaatggaggtctcaccttcgacagagcagcttgttcag
gtatacaagctggccctgcactacactcagcaccaggaccacaatgttgttaccggcgcg
ttggagctcctgcagcagcttttgcgtacccccccaccagagcttctggtcaccctgacc
atggccggcggttgggggcagctggtgggtgccaaggatgagtgggactgccggagtcgg
agcgggagcattgtggagctgattattggaggagggtcttcctgcagccccatgctttcc
agaaaacaaaaagggaaggtgctcctgggagaagcagctgccctggaggacgactcggag
tcgaggtcagagggcagcagcccagcctttgcagcctctgttaagggggagaccagtggt
gagctggctgcccccacgggcctctccacacctggctcgaccgactcggccttgcatgac
atcatcacggagcagccacgcgcgcagcacacactgcagcccgactcgatggacctgagc
acagccaccaatggtgacgaggaggacattctgagccctagctccagccagatcagtact
gttccatctgaccccaccctggacctcaatgacggcacacaggcctcatcgcccatcagt
gagagctcccagaccacgactgaggggccagactctgccatcaccccttctgacagttct
gaaattgtcttagatggtgtggatggccagtacttggggatcagccagccagaggatgag
gacatttccgatgaagcatcagatgccttccgaggctcctcccttgccctgcagcaggct
cgcttgctggacagctcgggccacagcaggcagtcatctgacagtagcgtggaacgcttc
ctgtgccgagaagacgcacctgaagctggcaagctggaaaacaagccctgccggatcaaa
ggcaatattggtcagtccacagacgacgattctcctcctcttgtccactgtgtccgcctt
ttgtcagcatcatttttgctgacgggggaaaagaaagccctggttcctgacagggacgtt
cgggtcagcgtgaaggcactggcactcagctgtgtgggagcagcagtggccctgcacccc
gaggccttcttcagcaaactctacaaagtccctctagaccgaacagaatacccagaggag
cagtacgtgtctgatgtcctgaactacattgaccatggagacccgcaggtccgaggagcc
actgctctcctctgcgggacccttatctgctccgtcctgaaacggtcccgcttccacgtg
ggacactggaccagcaacatccgaatgctgacaggaaactctttttctttggtggactgc
atccctttgttgcagaaaacgctcaaagacgagtcttctgtcacctgcaagttggcttgc
acagctgtaaggcactgcgtcatgagtctgtgcagcagctgttacagtgcgctgggcctg
caactgctcactgacgtgctgagcctgaggaacagctcctactggctagtgcgtactgag
ctcctggagatcctggcagagattgatttccggttggtgagctttttggaggcgaaagca
gaccgcttacaccgtggagcacatcactacactgggcttttgaacctgcaggagcgagta
cttgataatgttgtcatctatttgcttggggatgaagaccccagggtccggcatgttgct
gcagctacattagtgaagcttgtcccaaagctgttctataagtgtgaccaaggacaagct
gatccagtggtagctgtggcccgggaccagagcagcgtttacctgaagctgctcatgcat
gagacacagccatcctgccacttctctgtgagcacggtcaccagaatctatagaggctat
aacttactgcccagcatcactgatgttacgatagaaaacaacctttcgagagtgattgca
atggtttctcggggcctgatcacatctaccacacgcgcactcacgtttggatgctgtgaa
gccttgtgtctcctctcaacggcctttcccatctgcatctggagtttgggttggcactgt
ggggtgcccctgctgagcgccagcattgagtcccgcaaaagctgcacgattgggatggcg
cccatgatactcacgctgctctcatccgcctggttcccactggacctctctgcccaccag
gatgccctcattctgactggcaacttgctggcagccagtgcccctaagtccctgcggaac
tcctggagttctgaggatgaggctgcatccgggaggcaggaggaggtgtggcccgcacta
ggggaccgcagcctggtgcccatggtggaacagctcttctcccacctgctcaaggtcatc
aacatctgtgcccatgtcctggatgatgtcactcctgggcccgctctcaaggcagccttg
ccatctctgaccaatcccccatcgctgagccctatccgccgaaagggaaaggagaaggag
tctgtggaatcagcgtccgtgccgcagagtccaaagaagggcagcgaagctagcccagcc
tttcgccaatcagatgtctcagggactgctccagccaacaaatcgtcatcactggggagt
ttctatcatcttccttcctatctaaaactgcacgatgtcctgaaggccacacacgctaac
tacaaggtcaccctggatcttcagaacacctctgagaaatttggtagctttcttcgcgct
gcccttgatgttctcgcacagatcctagagctggcgaccttgcaggacattggaaagtgt
gttgaagagatcctggggtacctgaaatcctgtttcaaccgagaacccaccatggcgact
gtctgtgtccagcaactgctaaagactctcttcgggaccaacctggcctcccagtttgaa
ggcctgtctacaaaccccagcaagtgccaaagccgtacccagcgtctcggctcatcgagt
gtgaggcctggcttgtaccactactgcttcatggctccctacacccacttcacccaggcc
ctggccgatgcaagcctgagaaacatggtgcaagctgagcaggaccatgatccctcaggc
tggttcgatgtgctccagaaagtgtccactcaactcaagagcaatctcactggtgtctcc
aagatccgtgcagataagaatgccattcacagtcacatccgcttgtttgagcctctggtt
atcaaggcactgaagcaatataccaccaccacatctgtgcggctgcagaggcaggtgctg
gacctactggcacagttggttcaactgagggtcaactattgcctactggactctgaccag
gtgtttattggatttgtcctgaaacagtttgagtacattgaagtcggccagttcagggaa
tctgaggcaattattccaaacatctttttcttcctggtgctgctatcttacgagcgctat
cattctaagcagatcatcgggatccccaaaatcatccagctctgtgatggcatcatggcc
agtggcaggaaggctgtgacccatgccatcccggccctgcagcccatcgttcacgaccta
tttgtgttgaggggaactaataaggctgacgcagggaaagaactggaaacacagaaggag
gtggtggtgtccatgcttctgagactcatccagtaccaccaggtggtggagatgtttatc
ctggttttgcagcagtgccacaaggagaatgaagacaagtggaagcgtctgtcacggcag
gtggcagatgttgtcctccccatgctggcccggcagcagatgcacattgactcccatgaa
gccctgggtgtggtgaacacactcttcgagatcctggccccagcctccctgcgacctgtg
gacatgctcctccggagtatgttcgtcacccccgacactatgagctcggtgagcacagtc
cagctgtggattgctggcatcctgtccatcctgagggttctcatttcccagtcgacggaa
gacatcgtcctgtctcgcatccaggagctctccttgtccccctgcttcatctcctgccca
gtcatcaatcgattgcgtgagggggaccagagtcccgtaccagaggaacatggagaaggc
agacagcccaagagcctgcctgaagaaatgttcgctaggtttctgctgcagctggttggc
atcctgctcgaggacattggcacaaagcagctgagggtagacatgagcgagcagcagcac
acattctactgccaggaattgggcacattgctcatgtgccttatccacatctttaagtca
gggatgttccggaggatcacagctgctgccacgcgcctcttcacagtcacaggcaccgac
agcaccttctatggacttgagagcctgaatgcgtgtgtgcgtgccatggcgcccacacac
ccagcacttgtgctgctgtggtgccaggtcctactgctcgtcagccatacagactaccgc
tggtgggcggaggtgcagcagacccctaaaaggcgcagtctgtccagcatgaagaccctc
ggcctgcagctctctggagacgaggatatagactcagcagcccgactaggcgtgtgcaac
caagagatcgtgcggcggggtgccctcatcctcttctgtgactatgtgtgtcagaacctg
catgactcggagcacctgacgtggctcatcgttaaccacattcaggacctgatcagcctc
tcccacgagccacccgtgcaggactttatcagtgccatccaccgcaactcagcagccagt
ggcctcttcattcaggccattcagtcccgttgtgacaacctagcatcgcctgctaccctg
aagaagacgctgcagtgcctggaggggatccacctgagccagtcaggtgctgtgctcacg
ctctatgtggacaagctgctctgcaccccgctgcgtgtgctggcacgcatggtcgacacc
ctggcttgtcgccgggttgaaatgctactggcagcaaatctacagagcagtgcagcgcag
ctgcctggcgaagaagtgaaccgcatccaggagcacctgcagagcagcgggcttgcccag
agacaccagcgcctctactccctgctggacaggctccgcctcactgcagcccccagctcc
cttggccccgctcctccactcacgtcacacccactagatggggaagggctgctggcactg
gagacggtgaacccagacaaggactggtacatccgtctggtgaaatcccagtgctggacc
aggtccgattctgccctgctggaaggggcggagctggtgagcggcatccccgctggggac
ctgagcccgttcatgatggccccggagttcaacgtcagccttctcgccccctgcctgggc
ctgggtctgcgtgaaatttctgggggccagaagagcccccttttcgaagccgctcaaatg
gtgactctggagcgtgtggccagcatggtccagcagctccctgctgtccaccaagttttc
cagcccttcctgccagtggagcctaatgcctactggaacaagctagacgacctatttggg
gacactgcactctactgctccttgaccaccttggcccgagcactggcccaatacctgcta
gctgcttccaagcttcctggccatttgcaccttcccccagagagggagggtgacatcgtg
aagttcgtggtgatggttctggaggcactggcatggcacctggtccatgagcgcatcccg
atgagcctggacctgcaggctggcctggattgctgctgcctggctctacaactgccccgc
ctgtggaatgtggcctcttccccggagatggtcacccacacctgctcccttattcattgt
gtccgctgcctcctggaagccattgtggttcagcctggggaccagctgctgagtccagac
aggaccgacattccacacactgttggagccaatgtcaatgccagtgtccagacccctggg
tacgtggtggcagcttgtgcgatgatggcggaaatggtggagtccctgccatcagtgctg
gccctgggccaccagaggagcagcagcgtgcccgccttcctcacacctgtgctcaggaac
atcgtggtcagcctggcccgcctgcccctcgtcaacagctatacccgtgttcccccgctg
gtgtggaagctcggctggtcccccagaccaggaggagatttcggaacattgtaccctgag
atccctgtggagttcttgcaggagaaggaagttctcaaggatttcatctaccgtgttaac
actctagggtggaccagccggacccagtttgaggaaacttgggcctcccttctcggagtc
ttggtgacacagcccctggtgatggagcaggaggagagcccaccagaagaggacacagag
aggacccagatcaacgtcctggctgtgcaagccatcagctcgctggtactaagcgcgatg
acggtacctgtggctggcaaccctgctgtgagctgcttggagcagcagccgcggagcaag
cccttaaaggccctcgacaccagatttgggaggaagctgagcatcattcgaggaatcgtc
gagcaagaaattcaggcaatggtttcaaagagagagaacctcgccacccatcacctgtac
caggcgtgggatcccatcccatctctgtctcctgccactacaggtgtcctcatcagccat
gacaatctgctcctgcagaccaacccagagcgggagctgggcgacatgagctaccagctg
ggccaggtgtccatccactctgtgtggctggggaacaacatcacacccctgagggtggag
gagtgggaggaggaagaggaggaggaggaagaggcgactgatacacccaccccagcctcc
ccacctacatcccccatcaattccagaaagcaccgggctggtgtggacatccactcctgt
tcgcagtttctcctagagttgtatacacgctggatcctgccttctagttcagccagaaag
atgcccgttatcctcattagtgaagtggtgcgctctctcctcgttgtgtcggacctgttc
actgaacgcagccagtttgagatgatgtactcaacgctgatggagctgcggagggtgcac
cctgtggaggacgagatcctgctgcagtacctggtgcccgccacttgcaaggcagctgct
gtgcttggcatggacaaagcagtggctgagcctgtcagcaggctgctggagagtgccctg
cgcagtggccacctgcccagcaagatcggggcactgcatggtatcctctatgtgctggag
tgtgacctactagacgacacagcaaagcagcttgtcccactcgtcagcgactatgtgctc
accaccctcaaggctgtggctccctgtgtgaacattcacagccagtggcatgtgctggta
acatgtgccactgccttctacctgatcgagaactaccctttggacgtggggcccgacttc
tcagcctccgtcatccagctgtgtggggtaatgttgtcggctagcgaggaggccaccccg
tccagcgtctaccactgcgtgctacggggcctggagcgcctcctgctgtccgagcagctt
tcgcgacttgatgccgagtccctggtgaagctaagcgtggacagaatcaacgtgcacagc
ccacaccgcgcactggcagccctgggcctgatgctcacctgcatgtacacagggaaagag
aagatgagcccaggcagggcctcagcccccagccccacggccccagacagcgagtcggtg
atcgtggccatggagcgagtatctgtgctttttgacaggatccggaagggctttccttgt
gaggcccgcgtggcagcacggatcttgcctcagtttctagatgacttcttcccaccccag
gacgtgatgaataaggtcattggggagtttctgtccaatcagcagccatacccgcagttc
atggccaccgtggtgtacaaggtcttccagacactgcacaactcgggccagtcatccatg
gtacgggactgggtcatgctgtcgttgtccaacttcacgcagaggaccccagtggccatg
gccgtttggagtctctcctgcttcttcatcagcgcctccaccagcccctgggtgtcagcc
attctcccacatgtggtgagcagaatgggcaaactggagcaggtggatgtcagcctcttc
tgcttggtagctactgacttctacaggcggcagattgaggaggagctggaccgccgcgcc
ttccaatcagtgttcgaggtggtggcgggccctggaagcccttaccagcggttgctcaca
tgcctgcagaagctccacaaggactccacgtgctga
DBGET
integrated database retrieval system
