Suncus etruscus (white-toothed pygmy shrew): 126032335
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Entry
126032335 CDS
T09902
Symbol
PDLIM5
Name
(RefSeq) LOW QUALITY PROTEIN: PDZ and LIM domain protein 5
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
126032335 (PDLIM5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
setr04990
]
126032335 (PDLIM5)
Domain-containing proteins not elsewhere classified [BR:
setr04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
126032335 (PDLIM5)
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GFIT
Motif
Pfam:
LIM
PDZ
PDZ_6
DUF4749
PDZ_2
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
126032335
NCBI-ProteinID:
XP_049645945
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Position
16:83210050..83352070
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AA seq
610 aa
AA seq
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MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQG
MTHLEAQNKIKGCTGSLNMTLQRASVASKPEPVPVQKGEPKEVVKPVPITSPAVSKVTST
ANMPYNKAPRPFGSVSSPKVTSIPSPSTAFTPAHVTTSSHAFPPSAAAVTPPPLVTSGLH
ASANFSADQHSSALSAGPTAVTVPRQPTVTSVCSETAQGRLAEGQSRGSQGDSKQQNGGS
NPGTMKIPLNAHPRKHIVERNTEFYHIPTHSDASKKRLIEDTEDWHPRTGTTQSRSFRTL
AQITGTEHLKESETDNMKKTNSSQEPSQQLTPAVTSTRSIPEKSESPSSARPGVAGLTTA
AAFKPLSSTNVIKSPSWQPPSSAAPSTARISNKMPSAGAAVPTSSVVGPPQPSEQDTLVQ
RAEHIPAGKRTPMCAHCNQVIRGPFLVALGKSWHPEEFNCSHCKHTMAYIGFVEEKGSLY
CELCYEKFFAPECGRCQRKILGEVINALKQTWHVSCFVCVACGKPIRNNVFHLEDGEPYC
ETDYYALFGTICRGCEFPIEAGDMFLEALGFTWHDTCFVCSVCSESLEGQTFFSKKDKPL
CKKHAHSLNV
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactacagcgtgtccttggttggcccagctccttggggtttccggctgcaaggt
ggcaaggatttcaacatgcctctgacaatctctagtttgaaagatggtggcaaggcatcc
caagcacatgtaagaataggtgatgtggttctcagcattgatggaataagtgcacaagga
atgactcatcttgaagcccagaacaagattaaaggctgtacaggctctttgaatatgact
ctgcaaagagcatctgttgcatctaaacctgagccagttcctgttcaaaagggagaacct
aaagaagtagttaagcctgtgcccattacatctcctgctgtgtccaaagtcacttccact
gccaacatgccctacaataaggcaccacgaccctttggttctgtttcttcacccaaagtc
acatccatcccatcaccatcgactgccttcaccccagcccatgtgaccacttcatcacac
gccttccctccatccgctgctgctgtcactcctcccccactcgttacatctggactgcat
gctagtgccaattttagtgctgaccagcattcatctgcattgagtgctggtccaactgca
gttactgtcccacggcagcccacagtcaccagcgtgtgttccgagactgctcaggggagg
ctagcggagggacagagtagaggatcccagggtgacagtaaacagcaaaatgggggtagt
aaccctggtaccatgaaaatccctctaaacgcccacccaaggaagcacattgtcgagcgc
aatacagagttttatcacataccaactcacagcgatgccagcaaaaagagactgattgag
gatactgaggattggcatccgagaactggaacaacacaatctcgatcttttcgaactctt
gctcaaattacggggactgaacatttgaaagaatctgaaactgacaatatgaagaagaca
aacagctcccaggagccatctcagcagttaaccccagcagtgacctctactcggagcatt
ccagagaagtcagagagcccatcctcggccagaccaggggtggcaggtctcaccactgct
gctgccttcaaacctctgagttccaccaatgttatcaaatcaccaagctggcagccacca
agctcagcagcaccatccacagcgaggatttccaacaaaatgccttcagcaggcgcagct
gtccctaccagctcagtcgtggggccaccccagcccagtgagcaggatactttggtgcaa
agggctgagcacatccctgcaggaaaacgtacacccatgtgtgcccactgcaaccaagtt
atcaggggaccatttctagtggcactgggcaagtcttggcatccagaagagtttaactgt
tctcactgcaaacatactatggcctacattggatttgtagaggaaaaaggatctctgtac
tgtgaactgtgctatgagaaattctttgctcccgaatgtggtcgatgccaaaggaagatc
cttggagaagtcatcaatgcgttgaaacaaacctggcatgtttcctgttttgtgtgtgtg
gcatgtggaaagcccattcgcaataatgtttttcacttggaagatggggaaccttactgt
gagactgattattatgctctctttggcactatatgccgtggatgtgaatttcccatagaa
gctggcgacatgttcctagaggctcttggcttcacctggcacgacacttgttttgtgtgc
tcagtatgttctgaaagtttggaaggccagacctttttctccaagaaggacaagccactt
tgtaagaaacatgctcattctctgaatgtttaa
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