Suncus etruscus (white-toothed pygmy shrew): 126032598
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Entry
126032598 CDS
T09902
Symbol
NUP54
Name
(RefSeq) nucleoporin p54
KO
K14308
nuclear pore complex protein Nup54
Organism
setr
Suncus etruscus (white-toothed pygmy shrew)
Pathway
setr03013
Nucleocytoplasmic transport
setr05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
setr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126032598 (NUP54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
126032598 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
setr03019
]
126032598 (NUP54)
Messenger RNA biogenesis [BR:
setr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
126032598 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Pyocin_S
Motif
Other DBs
NCBI-GeneID:
126032598
NCBI-ProteinID:
XP_049646209
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Position
16:complement(65062201..65088562)
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AA seq
560 aa
AA seq
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MAFNFGAPSATSGTAAATAAPTGFGGLETANSTASGFNFGGFGLTANPAVNFNIGSFGVS
TTSATPFNFGNSLASAGGFGGFGTTTTATGSAFSFSAPTNTGTTGLFGGTQNKSFGFGTG
FGTTTGTNSGLGTGLGTALAFGGLNTQPQQQQTSGLFSQPTQVPTQSNQLINTASALSAP
TLLGDERDAILAKWNQLQAFWGTGKGFFNHTIPPVEFTQENPFCRFKAVGYSCMPNNKDE
DGLVVLVFNKKETDIRSQQQHMVESLHKILGANQTLTVNVEGIKTLPDDQTEVVIYVVER
SPNGTSRRVPATTLYSHFEQNSIKSQLQNLGVTLSMTRTELSPAQIKQLLQNPPAGVDPI
IWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDISELQKNQTT
TMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQSELNAPTQF
KGRLNELMSQIRMQNHFGAVKSEEKYCVDSDLLREIKQHLKQQQEGLSHLISIIKDDLED
IKLVEHGLNETIHNRGGLFS
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggccttcaacttcggggctccgtcggccacctcgggcaccgctgcggccaccgcggcc
cccacgggatttggtgggcttgagactgccaactctaccgccagcgggtttaattttggg
gggttcggcttaaccgccaaccccgccgtgaactttaatattgggagtttcggtgtttcc
accacctcggcgactccgttcaattttgggaatagtctggcgagtgcaggtgggtttgga
ggatttggaacaactacaacagcaacaggttctgctttcagtttttctgccccaactaac
acggggacaactggattgttcggtggtacgcagaacaaaagttttggatttggtactggt
tttggcacaacaacaggaactaattctggattgggtactggtttgggaactgcactggca
tttggaggattaaatacacagccacaacagcagcaaactagtggtctcttcagccagcct
acacaagtgcctacacagtccaaccagctgattaataccgcgagtgctctttctgctcca
acgttattgggagatgagagagatgctattttggcaaaatggaatcaactacaggccttt
tggggaacaggaaaaggatttttcaaccataccattccaccagtggaatttacacaagaa
aatcccttttgccgatttaaggcagtgggttatagttgtatgcccaataataaagatgaa
gatgggcttgtggttttagttttcaacaaaaaggaaacagatattcgaagccagcagcaa
catatggtagaatcactgcataaaattttgggagcaaaccagacccttactgtaaatgta
gagggtattaaaacattgccagatgatcagacagaagttgtcatttatgttgttgagcgt
tctccgaatggtacctcaagaagagttccagcaacaacattatattcacattttgaacaa
aactctataaaatcacaattgcagaaccttggtgtaaccctttctatgactagaacagaa
ctttctcccgcacagatcaagcaacttctacaaaatcctccagctggtgttgaccctatt
atttgggaacaagccaaggtagataacccagattctgaaaagttaattcctgtgccgatg
gtggggttcaaagaactgctcagaagactgaaagttcaagatcagatgacaaagcagcat
cagaccagattggatattatatctgaagatattagtgaattacaaaagaatcaaactaca
accatggccaaaattgcacaatacaagcggaaactcatggatctttctcacagaacttta
caggtcctgatcaaacaggaaatccagaggaagagtggctatgcaatccaagctgatgaa
gaacagttgcgagttcagttagatacaattcagagtgaactcaatgcccctacacagttt
aagggccgactaaatgaactgatgtcccagattaggatgcagaatcactttggagctgtg
aagtctgaagaaaaatattgtgtagactcagatctgttaagagaaatcaagcagcatttg
aaacaacaacaggaaggtcttagtcacttgatcagtatcataaaagatgatctggaagat
ataaagttggtagaacatggattgaatgaaacgatacacaacagaggtggtctcttcagt
tga
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